Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq165807 576 4e-160 seq452 547 2e-151 seq3541 206 8e-49 seq8266 113 1e-20 seq112378 98.7 3e-16 >seq165807 Length=4432 Score = 576 bits (638), Expect = 4e-160 Identities = 733/1006 (73%), Gaps = 2/1006 (0%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||| ||| | || ||| | |||||||||||| |||| |||||| Sbjct 2947 TGGGGTCGCTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTT 3006 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| |||||||||| | | | | || || | ||| |||||| |||||||||| Sbjct 3007 GGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCAT 3065 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| || || Sbjct 3066 TGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 3125 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| ||||| ||||| ||||||||| | | |||| | || || || | || || Sbjct 3126 TGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTT 3185 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| || |||| |||||| | ||||| ||||| |||||| | Sbjct 3186 TTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGA 3245 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 ||| | || | |||||| | | ||| | | |||| |||| || || |||||||| Sbjct 3246 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACT 3305 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| |||||| || || || ||||| || || Sbjct 3306 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGC 3365 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || ||||| || ||| | | |||||| | || ||||| |||||| ||||| ||||| Sbjct 3366 GGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCC 3425 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || || || ||||| || ||||| ||| | || ||||||||||| || ||||| || Sbjct 3426 TCTAGGAATCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCT 3485 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || || || ||| | || || || || ||||| || || || | ||| || Sbjct 3486 TATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGC 3545 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | | || |||||| | | | | ||||| || ||||| ||| Sbjct 3546 TATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 3605 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| | || |||| || ||||||||||| || |||||||| || || || || ||||| Sbjct 3606 TAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGG 3665 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTT 43058 ||| ||||| || | |||||||||||||| ||||| || ||| ||||| || || Sbjct 3666 TTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTT 3725 Query 43059 CTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTAT 43118 ||| | || |||||||| || || || || ||||||||| || | || | || ||||| Sbjct 3726 CTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTAT 3785 Query 43119 GGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGT 43178 ||| || || | |||||||| || || |||||||| | ||||||| ||| || ||| Sbjct 3786 GGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT 3845 Query 43179 CATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGA 43238 || ||| |||||||||||| | || ||||| |||||||| | || || ||||| || Sbjct 3846 AATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGA 3905 Query 43239 GCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGGTT 43284 || ||||| ||||| ||||| || || || || | || || ||| Sbjct 3906 ACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGCTGTCGAAGTT 3951 >seq452 Length=65819 Score = 547 bits (606), Expect = 2e-151 Identities = 723/995 (73%), Gaps = 6/995 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || || |||||| | || || | ||||||||||| |||| |||||| Sbjct 10766 TGGGGTCGCTTCTGCAACTGGATAACCAGTACCGAAAACCGTCTTTACATTGGATGGTTT 10707 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | | || || | ||| |||||| | || |||| Sbjct 10706 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCA 10649 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| || | Sbjct 10648 TTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTT 10589 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 | || ||||| || || || |||||| | | |||| | || || || | || | Sbjct 10588 ACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACT 10529 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | ||||||||||| || |||| |||||| | ||||| || || |||||| Sbjct 10528 TTTACCCAATCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATG 10469 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 | || | || | |||||| | | ||| | | |||| |||| || || ||||| | Sbjct 10468 AACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGC 10409 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || | ||| | || ||| | || ||||| |||||| || || || ||||| || | Sbjct 10408 TTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGCTCCTGTTGCAG 10349 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 | || || || || ||| | |||| ||| |||| ||||| |||||| ||||| |||| Sbjct 10348 CTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGC 10289 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 |||| || ||||| ||||| |||||||||||| | || ||||||||||| || ||||| | Sbjct 10288 CTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCC 10229 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 ||||||| || || |||||| | ||||| || || ||||| || || || | ||| | Sbjct 10228 TTATGCACCCATTTCATATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTG 10169 Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937 ||||||||||| | || || ||| | | | | ||||| || ||||| ||| Sbjct 10168 CTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTG 10109 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 ||| | || |||| |||||||||||||| || |||||||| || || || || |||| Sbjct 10108 CTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATG 10049 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCAC 43056 |||||||||| || | |||||||||||||| | |||| || || ||| || || ||| Sbjct 10048 GTTACTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCATTACAC 9990 Query 43057 TTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACT 43116 ||||| | || |||||||| || || || || ||||||||| || | || |||| || Sbjct 9989 TTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACC 9930 Query 43117 ATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCAT 43176 ||||| || ||| | |||||||| || || |||||||| | ||||||| ||| | | Sbjct 9929 ATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGT 9870 Query 43177 GTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCAC 43236 || || ||||||||||||||| | || ||||| |||||||| | || || ||||| Sbjct 9869 GTAATTAATACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 9810 Query 43237 GAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 || || ||||| ||||||||||| || || || || Sbjct 9809 GAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 9775 >seq3541 Length=30046 Score = 206 bits (228), Expect = 8e-49 Identities = 264/360 (73%), Gaps = 9/360 (3%) Strand=Plus/Plus Query 42772 GGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTC 42831 ||||| |||||||||||| | || ||||||||||| || ||||| |||||||| || || Sbjct 15372 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 15431 Query 42832 CATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGT 42891 |||||| | ||||| || || ||||| || || || | ||| |||||||||||| Sbjct 15432 CATATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 15491 Query 42892 CTTGTCACCTCTTCTCTTGT--GCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCT 42949 | || || ||| | | | | | |||| ||||| ||| ||| | || | Sbjct 15492 TTGGTAACTTCTAGTTTGATCAGGGGGAAA-----GAAAATGAATCTGCTAATGAAGGTT 15546 Query 42950 ACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGAC 43009 ||| |||||||||||||| | |||||||| || || || || |||||||||||||| | Sbjct 15547 ACAGATTCGGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATGGTTACTTTGGCC 15606 Query 43010 GGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCC 43068 | | |||||||||||||| | |||| || || ||| || || |||||||| || || Sbjct 15607 GATTGATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCT 15665 Query 43069 GCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAAC 43128 |||||||| || || || || ||||||||| || | || |||| || ||||| || ||| Sbjct 15666 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACCATGGCTTTCAAC 15725 >seq8266 Length=1953 Score = 113 bits (124), Expect = 1e-20 Identities = 206/301 (68%), Gaps = 28/301 (9%) Strand=Plus/Plus Query 42316 AACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTC---CCTGTCTGCTCGCTGCT 42372 ||||||||||| |||| ||||||||||| ||||||| | ||| | || ||| || Sbjct 867 AACCGTCTTTACATTGGATGGTTTGGTGTT-TGATGATCCTAACCTAT-TGACCGCAACT 924 Query 42373 ACCACCTGTTTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCG- 42431 | |||||||||| | ||||||||||| ||||| ||||| |||||||| ||||| Sbjct 925 TC----TGTTTTATTGCC---TTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 977 Query 42432 ---------------TGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTC 42476 ||||||||| ||||| ||||| || || || ||||| || || || Sbjct 978 GAAACCGTTTCGGATTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTC 1037 Query 42477 TGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGC 42536 |||||| | | |||| | || || || | || || || | ||||||||||| Sbjct 1038 AGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAATCTGGGAAGC 1097 Query 42537 CAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTT 42596 || |||| |||||| | ||||| || || |||||| | || | || | ||||| Sbjct 1098 AGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTT 1157 Query 42597 C 42597 | Sbjct 1158 C 1158 >seq112378 Length=4714 Score = 98.7 bits (108), Expect = 3e-16 Identities = 125/171 (73%), Gaps = 7/171 (4%) Strand=Plus/Plus Query 42719 TCTATCCATTTGGGCAAGGTTCTTTTTCA-GATGGAATGCCTCTTGGCATTTCCGGTACG 42777 |||| ||| |||| ||||| |||||| ||||| |||||||| || ||||| ||||| Sbjct 2501 TCTACCCAATTGGTCAAGGAAGTTTTTCCTGATGGTATGCCTCTAGGAATTTCTGGTACT 2560 Query 42778 TTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATG 42837 |||||||||||| | | ||||| || | || || |||||| || || |||||| Sbjct 2561 TTCAACTTCATGATTATATTCCAAGCACAGCA------TCCTATGCACCCATTTCATATG 2614 Query 42838 CTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGT 42888 | ||||| || || ||||| |||| || | ||| | |||||||||| Sbjct 2615 TTGGGTGTAGCTGGTGTATTCAGTGGCTCCCTATTCAGTGTTATGCATGGT 2665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143207461020048