Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq452 493 4e-135 seq165807 491 1e-134 seq3541 170 6e-38 seq8266 123 7e-24 seq112378 109 2e-19 >seq452 Length=65819 Score = 493 bits (546), Expect = 4e-135 Identities = 696/975 (71%), Gaps = 2/975 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 9775 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 9834 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 9835 GCACGGTTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACAGAT 9894 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| |||| |||||| | || || | | Sbjct 9895 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAAGCAGTGAAC 9954 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| | ||||| || | ||||| ||| || ||| Sbjct 9955 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAA 10014 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| |||||||| || || ||||| || |||||||| || Sbjct 10015 CTAGCATATTGGAAGATCAATCGGCCAAAGTAACCATGAGCAGCTACGATATTATAAGTT 10074 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || | ||| || | | ||||| ||||| Sbjct 10075 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 10134 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| ||||| || ||||||||| ||| || | || ||||| || Sbjct 10135 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 10194 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| ||||| |||||| ||||||||||| || || || || || || |||||||| Sbjct 10195 CCAGCTACACCTAACATATGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 10254 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||| ||||| ||||||||||| || || |||||||| |||||| |||||| ||||| Sbjct 10255 ATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 10314 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | || || | ||||| || ||| ||| || | | || |||| ||| |||||| Sbjct 10315 CCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATACGCAACA 10374 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || | | | || || ||||||| | || || Sbjct 10375 GCAATCCAAGGGCGCATACCCAAACGGAAACTAAGCTCCCACTCACGACCCATGTAACAA 10434 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| |||| ||| || || || ||||||| ||| Sbjct 10435 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCAT 10494 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | | ||||||||||| |||||||| || | ||||| || ||| | Sbjct 10495 TCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGATAGCTGCAGAAGTA 10554 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716 || | | || ||||| || |||||||||||||| | || || || ||||| || ||| Sbjct 10555 GGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCA 10614 Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGT 26775 || || ||||| |||||||| || || || || |||||||||| ||||| ||| | ||| Sbjct 10615 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-GAAGT 10673 Query 26776 GGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTC 26835 || | | |||| || ||||| | || || |||||||| | || |||||||| || Sbjct 10674 TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 10733 Query 26836 AGTACTTGTAACCCA 26850 ||||| || | ||| Sbjct 10734 GGTACTGGTTATCCA 10748 >seq165807 Length=4432 Score = 491 bits (544), Expect = 1e-134 Identities = 703/985 (71%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || || |||||||||||||| || ||||||||||| | || |||||| Sbjct 3938 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 3879 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 3878 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 3819 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || ||||||||||| || || ||||| |||| ||||| | || || | | Sbjct 3818 TGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 3759 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| | |||||||| | |||||| ||| |||||| Sbjct 3758 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGTTAAAA 3699 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || || || || |||||||| || Sbjct 3698 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 3639 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| ||||| | || || | ||| || | | ||||| ||||| Sbjct 3638 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 3579 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | || || |||||| || ||||||||| ||| || | || ||||| || Sbjct 3578 ATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 3519 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| || || ||| || ||||||||||| || || || || || || |||||||| Sbjct 3518 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 3459 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | |||||||||||||||||||||||| || |||||||| ||||| |||||| ||||| Sbjct 3458 ATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTCCTTGA 3399 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 |||| ||||||| ||||| || || ||| || | | || |||| |||||||||| Sbjct 3398 CCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAACA 3339 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || || | | || |||||||||| | ||| || Sbjct 3338 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCATGTAACAA 3279 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| || | ||| || ||||| ||||||| ||| Sbjct 3278 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCAT 3219 Query 26597 TCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | |||| |||||||| || |||||||| || | || || || ||| | Sbjct 3218 TCATCAACGGATGCC-GCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAGT 3160 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || ||||||||||| || | || || || ||||| || || Sbjct 3159 AGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTC 3100 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || ||||| || ||||| || || || || ||||| || | ||||| ||| | || Sbjct 3099 ACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACA-GAAG 3041 Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | || | | ||| || ||||| | || || |||||||| | ||| |||||||| | Sbjct 3040 TTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACGGTTTT 2981 Query 26835 CAGTACTTGTAACCCACTCACAAAA 26859 |||| || || | ||| | ||| || Sbjct 2980 CAGTGCTGGTTATCCAATTACAGAA 2956 >seq3541 Length=30046 Score = 170 bits (188), Expect = 6e-38 Identities = 254/358 (71%), Gaps = 3/358 (1%) Strand=Plus/Minus Query 26019 GGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAG 26078 |||| || ||||| |||| |||||| | || || | ||| || || || || ||||||| Sbjct 15726 GGTTGAAAGCCATGGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAG 15667 Query 26079 TAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATC 26138 ||| || ||||| || | ||||| ||| || ||||| ||||| || || || |||| Sbjct 15666 CAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATC 15607 Query 26139 TCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTAT 26198 |||||||| || || ||||| || |||||||| || | ||| ||||| || || | | Sbjct 15606 GGCCAAAGTAACCATGAGCAGCTACGATATTATAAGTTTATTCCTCTTGACCGAATCTGT 15547 Query 26199 AGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAAC 26258 | || | ||| || | | ||| || ||| || | ||||| ||||| Sbjct 15546 AACCTTCATTAGCAGATTCATTTTCTTTCCCC-CTGATCAAACTA--GAAGTTACCAAGG 15490 Query 26259 TTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGA 26318 || ||||||||| ||| || | || ||||| || ||||| ||||| |||||| | Sbjct 15489 AACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATATGAA 15430 Query 26319 ATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACC 26376 |||||||||| || || || || || || |||||||| | ||| ||||| |||||||| Sbjct 15429 ATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACC 15372 >seq8266 Length=1953 Score = 123 bits (136), Expect = 7e-24 Identities = 226/330 (68%), Gaps = 22/330 (7%) Strand=Plus/Minus Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| |||| ||| || || || ||||||| ||| Sbjct 1172 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCAT 1113 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | | ||||||||||| |||||||| || | ||||| || ||| | Sbjct 1112 TCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGATAGCTGCAGAAGTA 1053 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGG---- 26712 || | | || ||||| || |||||||||||||| | || || || ||||| || Sbjct 1052 GGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCA 993 Query 26713 ------------CTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAG 26760 ||||| || ||||| |||||||| || || || || ||||||||| Sbjct 992 ATCCGAAACGGTTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCA-- 935 Query 26761 TATAAAACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCAC 26820 |||||||| | ||| || | | || | || ||||| | || || |||||||| | Sbjct 934 -ATAAAACA-GAAGTTGCGGTCAATAGGTTAGG-ATCATCA-AACACCAAACCATCCAAT 879 Query 26821 ATAGAGACGGTTCTCAGTACTTGTAACCCA 26850 || |||||||| || ||||| || | ||| Sbjct 878 GTAAAGACGGTTTTCGGTACTGGTTATCCA 849 >seq112378 Length=4714 Score = 109 bits (120), Expect = 2e-19 Identities = 129/174 (74%), Gaps = 7/174 (4%) Strand=Plus/Minus Query 26246 GAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACA 26305 ||||| ||||| || |||||| || ||| || | |||| ||| || ||||| ||| Sbjct 2679 GAAGTTACCAAGGAACCATGCATAACACTGAATAGGGAGCCACTGAATACACCAGCTACA 2620 Query 26306 CCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAG 26365 || |||||| ||||||||||| | ||| | ||||||||||| | ||| ||| Sbjct 2619 CCCAACATATGAAATGGGTGCATAGG------ATGCTGTGCTTGGAATATAATCATGAAG 2566 Query 26366 TTAAAAGTACCAGAGATACCAAGAGGCATTCCATCA-CTAAAACTCCCTTGTCC 26418 || ||||||||||| || || |||||||| |||||| |||||| ||||| || Sbjct 2565 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGGAAAAACTTCCTTGACC 2512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147377188225920