Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq452 480 2e-131 seq165807 457 3e-124 seq3541 149 2e-31 seq8266 127 6e-25 seq112378 95.1 3e-15 >seq452 Length=65819 Score = 480 bits (532), Expect = 2e-131 Identities = 701/988 (71%), Gaps = 2/988 (0%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 9771 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 9830 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | ||| | | ||||||||||||| ||| || || | | || ||||| Sbjct 9831 GTTAGCACGGTTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTAC 9890 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || |||||||| ||||| |||||||| || ||||| | | || Sbjct 9891 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAAGCAGT 9950 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 | ||| || || | || || ||||| | | |||||||||| | ||| ||||| Sbjct 9951 GAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTT 10010 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 ||| ||||||||| || || | || ||||||||||| || ||||||||||| ||||| Sbjct 10011 GAAACTAGCATATTGGAAGATCAATCGGCCAAAGTAACCATGAGCAGCTACGATATTATA 10070 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 ||| || | || ||||| || | || || | || |||||| |||| ||||| || Sbjct 10071 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 10130 Query 40889 CCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAA 40948 || || | ||||| || | | || ||||||||| || | | || || || Sbjct 10131 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 10190 Query 40949 GACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAA 41008 || || || || || | |||||| ||||||||||| || |||||||| || || ||||| Sbjct 10191 TACACCAGCTACACCTAACATATGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 10250 Query 41009 GACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACC 41068 |||| |||||||||||| || ||| ||||||| ||||||||||||||| ||| || Sbjct 10251 TACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCC 10310 Query 41069 CTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGC 41128 ||||| | ||| || | ||||| ||||| ||| |||| | ||||||| || || Sbjct 10311 TTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATACGC 10370 Query 41129 CACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTA 41188 ||| ||||| || | |||||| | | | | ||| ||||||| | ||| ||| Sbjct 10371 AACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGCTCCCACTCACGACCCATGTA 10430 Query 41189 TGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAG 41248 ||||| || | ||| ||||| | ||||| |||| ||| || || |||||||||| Sbjct 10431 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAA 10490 Query 41249 CCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGA 41308 ||| || || | | | ||||||||||||||||| || || | ||||| || ||| Sbjct 10491 CCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGATAGCTGCAGA 10550 Query 41309 GCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGG 41368 | |||| | || || || ||||||||||| ||||| | || || || ||||| || Sbjct 10551 AGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGG 10610 Query 41369 CTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATG 41427 ||||| || ||||| |||||||| || || || || || ||||| || || || ||| | Sbjct 10611 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-G 10669 Query 41428 TGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGT 41487 || || || | ||| | || ||||| | ||||||||||| || | ||| || |||| Sbjct 10670 AAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGT 10729 Query 41488 TGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | ||||| || || | |||||| || || Sbjct 10730 TTTCGGTACTGGTTATCCAGTTGCAGAA 10757 >seq165807 Length=4432 Score = 457 bits (506), Expect = 3e-124 Identities = 702/993 (71%), Gaps = 10/993 (1%) Strand=Plus/Minus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||| ||||| ||||||||| || || ||||| ||||| || ||||| ||||||||||| | Sbjct 3943 CAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 3884 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | | ||||| || ||||||||| ||| ||| || ||| | | || |||| Sbjct 3883 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 3824 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || |||||||| || || ||||||||||| ||||| | | | Sbjct 3823 CAGATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAG 3764 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | | ||| || || | || || ||||| | | ||||| |||| | ||| |||| Sbjct 3763 TGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGT 3704 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 | || ||||||||| || || | || ||||| ||||| || || |||||||| |||| Sbjct 3703 TAAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 3644 Query 40828 AAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCT 40887 |||| || | || |||||||| | || || | || |||||| |||| ||||| | Sbjct 3643 AAGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 3584 Query 40888 CCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCAC 40944 ||| || | | |||| || ||| | || ||||||||| || | | || | Sbjct 3583 CCCTGATCAAACTAGAGGT--TACCAAAGAA-CCATGCATAGCACTGAATAGGGAGCCGC 3527 Query 40945 CAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTT 41004 | || || || || ||||| | ||| || ||||||||||| || |||||||| || || | Sbjct 3526 CGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCT 3467 Query 41005 GGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAG 41064 |||| |||| ||| ||||| || || ||| |||||||| |||||| ||||| || ||| Sbjct 3466 GGAATACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAAC 3407 Query 41065 AACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGT 41124 || ||||||| |||||||| ||||| ||||| ||| || | | ||||||| | Sbjct 3406 TTCCTTGACCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAAT 3347 Query 41125 ATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAG 41184 |||| ||| ||||| || | |||||| || | | | ||||||||||| | || Sbjct 3346 ATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCA 3287 Query 41185 CGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGT 41244 ||| ||||| || | ||| ||||| | ||||| || | ||| || |||||||||| Sbjct 3286 TGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGT 3227 Query 41245 ATAGCCACTCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCG 41303 ||| ||| || || | | ||||| ||||||| |||||||| || || | || || || Sbjct 3226 ATAACCATTCATCAACGGATGCCG-CTTCCCATATTGGGTAAAAGTGCAACCCTATAGCC 3168 Query 41304 TTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAA 41363 ||| | |||| | || ||||| || |||||||| || || | || || || ||| Sbjct 3167 GCAGAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAA 3108 Query 41364 ACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA- 41422 || || ||||| || ||||| || ||||| || || || || || || ||||| || || Sbjct 3107 ACAGGTTCACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAAT 3048 Query 41423 ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAG 41482 ||| | || || || | ||| | |||||||| | ||||||||||| || | || || Sbjct 3047 ACA-GAAGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAG 2989 Query 41483 GCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||| || ||||| || | ||| ||||| || Sbjct 2988 ACGGTTTTCAGTGCTGGTTATCCAATTACAGAA 2956 >seq3541 Length=30046 Score = 149 bits (164), Expect = 2e-31 Identities = 248/358 (69%), Gaps = 3/358 (1%) Strand=Plus/Minus Query 40675 GGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAATAACCGGGAAAG 40734 |||| |||||||| || ||||| | | || | ||| || || | || || ||| Sbjct 15726 GGTTGAAAGCCATGGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAG 15667 Query 40735 CACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTAGTC 40794 || | || |||||||||| | ||| |||||||| ||||||||| || || | || Sbjct 15666 CAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATC 15607 Query 40795 TACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACTTAT 40854 ||||||||||| || ||||||||||| |||||||| | | || ||||| || | | Sbjct 15606 GGCCAAAGTAACCATGAGCAGCTACGATATTATAAGTTTATTCCTCTTGACCGAATCTGT 15547 Query 40855 ACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGC 40914 | || | || |||||| |||| || ||| || | ||||| || | | Sbjct 15546 AACCTTCATTAGCAGATTCATTTTC---TTTCCCCCTGATCAAACTAGAAGTTACCAAGG 15490 Query 40915 TTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGA 40974 || ||||||||| || | | || || || || || || || || | |||||| | Sbjct 15489 AACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATATGAA 15430 Query 40975 ATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCC 41032 |||||||||| || |||||||| || || ||||| |||| |||||||||||| || || Sbjct 15429 ATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACC 15372 >seq8266 Length=1953 Score = 127 bits (140), Expect = 6e-25 Identities = 232/339 (68%), Gaps = 22/339 (6%) Strand=Plus/Minus Query 41193 GCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCAC 41252 ||||| || | ||| ||||| | ||||| |||| ||| || || |||||||||| ||| Sbjct 1172 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCAT 1113 Query 41253 TCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTC 41312 || || | | | ||||||||||||||||| || || | ||||| || ||| | Sbjct 1112 TCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGATAGCTGCAGAAGTA 1053 Query 41313 GGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGC-------------- 41358 |||| | || || || ||||||||||| ||||| | || || | Sbjct 1052 GGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCA 993 Query 41359 --CGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGAT 41416 | ||||||| ||||| || ||||| |||||||| || || || || || ||||| Sbjct 992 ATCCGAAACGGTTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGC--- 936 Query 41417 TATGAAACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTAC 41476 || ||||| | || || || | | | | | | ||||| | ||||||||||| || | Sbjct 935 AATAAAACA-GAAGTTGCGGTCAAT-AGGTTAGGATCATCA-AACACCAAACCATCCAAT 879 Query 41477 GTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||| || ||||| ||||| || || | |||||| || || Sbjct 878 GTAAAGACGGTTTTCGGTACTGGTTATCCAGTTGCAGAA 840 >seq112378 Length=4714 Score = 95.1 bits (104), Expect = 3e-15 Identities = 152/216 (70%), Gaps = 7/216 (3%) Strand=Plus/Minus Query 40869 GATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCA 40928 |||||| ||| ||||| |||| || | ||||| || | | || |||||| || Sbjct 2712 GATTCATTTTATGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAACA 2653 Query 40929 GCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGA 40988 || | | |||| || || || || || || | |||||| ||||||||||| || Sbjct 2652 CTGAATAGGGAGCCACTGAATACACCAGCTACACCCAACATATGAAATGGGTGCAT-AGG 2594 Query 40989 ATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGC 41048 ||| |||| ||||||| | || |||||||||||| || ||| ||||||| |||| Sbjct 2593 ATGCTGTG-----CTTGGAATATAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGC 2539 Query 41049 ATACCATCA-GAGAAAGAACCCTGACCGAATGGATA 41083 ||||||||| || ||| || ||||| | ||| || Sbjct 2538 ATACCATCAGGAAAAACTTCCTTGACCAATTGGGTA 2503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143376676595784