Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq452 614 6e-171 seq165807 565 3e-156 seq3541 246 3e-60 seq112378 149 7e-31 seq8266 123 3e-23 seq6888 84.2 2e-11 seq101245 82.4 9e-11 >seq452 Length=65819 Score = 614 bits (680), Expect = 6e-171 Identities = 707/950 (74%), Gaps = 6/950 (1%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 9771 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 9830 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||| | ||| || ||||||||| ||| || || ||| ||||| Sbjct 9831 GTTAGCACGGTTGATGATATCAGCCCAAGTATTAATTAC---ACGGCCTTGACTATCAAC 9887 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| |||||||| || |||||||| ||||| || | ||| | || Sbjct 9888 TACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAAGC 9947 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 |||||||||||| | || ||||| | ||||| | ||||||||| | | ||||| Sbjct 9948 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTT 10007 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| ||||| ||||||||||| || || ||||| ||||||||||| || || || Sbjct 10008 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAGTAACCATGAGCAGCTACGATATT 10067 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||| ||||| ||||| ||||| ||||||| | || || || | || || || Sbjct 10068 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGT 10127 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | |||||| || | ||||| ||||||||||| || || || || || Sbjct 10128 TTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCC 10187 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | |||||| |||||||||||||||||||||||||| || || Sbjct 10188 GAATACACCAGCTACACCTAACATATGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 10247 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | |||| |||| |||||||||||||| || |||||||| | ||||| ||| Sbjct 10248 GAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACT 10307 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||| | || |||| |||||| |||||| || || | || ||||| || || Sbjct 10308 TCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATA 10367 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACA 68014 || ||| |||||||| |||||||| | |||| || ||| ||||||| |||||| Sbjct 10368 CGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGCTCCCACTCACGACCCAT 10427 Query 68015 GTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATA 68074 ||| | | || | | |||||| | || | |||| |||| ||||| || || Sbjct 10428 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTA 10487 Query 68075 CAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTT 68134 ||||| ||||| | | ||||||||||||||| || || ||||| | |||||| || Sbjct 10488 TAACCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGATAGCTGC 10547 Query 68135 TGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAAC 68194 ||| |||||| || ||||| ||||| || ||||| ||||| | || || || | ||| Sbjct 10548 AGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAAC 10607 Query 68195 AGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCA 68254 |||||| | |||||||| ||||| |||||||| || |||||||| ||||| || || Sbjct 10608 AGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATAC 10667 Query 68255 AGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 || | ||| | | ||| ||| |||||||| ||||| ||||| |||| Sbjct 10668 AGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAA 10717 >seq165807 Length=4432 Score = 565 bits (626), Expect = 3e-156 Identities = 707/968 (73%), Gaps = 6/968 (1%) Strand=Plus/Minus Query 67357 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAA 67416 ||||||| ||||| |||||||| || ||||| ||||| || |||||||||||||| |||| Sbjct 3943 CAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 3884 Query 67417 GTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAA 67473 | || | ||||| || || ||||| ||| ||| || || |||| |||| Sbjct 3883 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTAC---ACGACCTTGACTATCAA 3827 Query 67474 CGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTG 67533 | || ||||||||||| |||||||| || || ||||| |||||||| | ||| | | Sbjct 3826 CTACAGATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAG 3767 Query 67534 CAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGT 67593 ||||||||||||| | || ||||| | ||||| | |||||| || | | | |||| Sbjct 3766 CAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGT 3707 Query 67594 TGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGT 67653 |||| ||| ||||| ||||||||||| || || || || |||||||| || || || | Sbjct 3706 TGTTAAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATAT 3647 Query 67654 TGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAG 67713 | ||||| ||||| ||||| || || ||||||| | || || || | || || | Sbjct 3646 TATAAGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGG 3587 Query 67714 TTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCAC 67773 |||| ||||| | | ||| || || | |||||| ||||||||||| || || || || | Sbjct 3586 TTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGC 3527 Query 67774 CGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTT 67833 |||||||||| ||||| || | ||| || |||||||||||||||||||||||||| || | Sbjct 3526 CGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCT 3467 Query 67834 GGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAG 67893 |||| || | ||| |||||||||||||||| || || |||||||| | || || ||| Sbjct 3466 GGAATACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAAC 3407 Query 67894 AACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGT 67953 |||||||||| ||||| | |||||| ||||| || || | || ||||| || | Sbjct 3406 TTCCTTGACCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAAT 3347 Query 67954 ATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCAC 68013 |||| ||| ||||||||||||||||| |||||| || ||||||||||| ||| || Sbjct 3346 ATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCA 3287 Query 68014 AGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTAT 68073 ||| | | || | | |||||| | || | || | |||| || || || | Sbjct 3286 TGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGT 3227 Query 68074 ACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGT 68133 | ||||| ||||| | | ||| |||||||| || || || ||||| | || || || Sbjct 3226 ATAACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCG 3167 Query 68134 TTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAA 68193 ||| |||||| || |||||||||||||| ||||| || || | || || || | || Sbjct 3166 CAGAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAA 3107 Query 68194 CAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGC 68253 ||||||| | |||||||| || || |||||||| || |||||||| || || || || Sbjct 3106 CAGGTTCACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATA 3047 Query 68254 AAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGC 68313 || | ||| | | || |||||||||||| ||||| ||||| |||| ||| | | Sbjct 3046 CAGAAGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGAC 2987 Query 68314 GATTGTCA 68321 | || ||| Sbjct 2986 GGTTTTCA 2979 >seq3541 Length=30046 Score = 246 bits (272), Expect = 3e-60 Identities = 271/360 (75%), Gaps = 7/360 (2%) Strand=Plus/Minus Query 67504 GGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATG 67563 ||||||| ||||| || | ||| | |||||||||||||| | || ||||| | | Sbjct 15726 GGTTGAAAGCCATGGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAG 15667 Query 67564 CAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGC 67623 |||| ||||||||||| | | |||||||||||| ||||| ||||||||||| | Sbjct 15666 CAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATC 15607 Query 67624 GACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGT 67683 | || ||||| ||||||||||| || || || ||||| | ||| ||||| ||||| ||| Sbjct 15606 GGCCAAAGTAACCATGAGCAGCTACGATATTATAAGTTTATTCCTCTTGACCGAATCTGT 15547 Query 67684 AACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTC--TGATAAGAGAAGAAGTAACAAG 67741 |||| | || || || | || |||| | |||| | | |||||| || | Sbjct 15546 AACCTTCATTAGCAGATTCATTTTC-----TTTCCCCCTGATCAAACTAGAAGTTACCAA 15492 Query 67742 AGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATG 67801 ||||| ||||||||||| || || || || ||||||||||| ||||| || | |||||| Sbjct 15491 GGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATATG 15432 Query 67802 GAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACC 67861 |||||||||||||||||||||||||| || ||||| || | |||| |||| |||||||| Sbjct 15431 AAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACC 15372 >seq112378 Length=4714 Score = 149 bits (164), Expect = 7e-31 Identities = 182/246 (74%), Gaps = 7/246 (3%) Strand=Plus/Minus Query 67674 CCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAA 67733 ||||| |||||||| | || || || | | || ||||| ||||| | | |||| Sbjct 2736 CCGAATTTGTAACCTTCATTAGCAGATTCATTTTATGTGGTTTCCCTGATCAAACTAGAA 2677 Query 67734 GTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCA 67793 || || | ||||| |||||| |||| || || || |||| ||||||||| ||||| || Sbjct 2676 GTTACCAAGGAACCATGCATAACACTGAATAGGGAGCCACTGAATACACCAGCTACACCC 2617 Query 67794 AGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTA 67853 | |||||| ||||||||||| |||| |||| ||||||||| | | |||| |||| Sbjct 2616 AACATATGAAATGGGTGCAT-AGGA-----TGCTGTGCTTGGAATATAATCATGAAGTTG 2563 Query 67854 AAAGTACCAGAAATACCAAGAGGCATTGCGTCA-GAGAAAGAACCTTGACCGAAAGGATA 67912 |||||||||||||| || |||||||| | ||| || ||| |||||||| | || || Sbjct 2562 AAAGTACCAGAAATTCCTAGAGGCATACCATCAGGAAAAACTTCCTTGACCAATTGGGTA 2503 Query 67913 GACCAA 67918 || ||| Sbjct 2502 GATCAA 2497 >seq8266 Length=1953 Score = 123 bits (136), Expect = 3e-23 Identities = 200/285 (70%), Gaps = 22/285 (8%) Strand=Plus/Minus Query 68036 GAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGC 68095 |||||| | || | |||| |||| ||||| || || ||||| ||||| | | ||| Sbjct 1158 GAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCATTCATCAACGGATGC 1099 Query 68096 TGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACC 68155 |||||||||||| || || ||||| | |||||| || ||| |||||| || ||||| Sbjct 1098 TGCTTCCCAGATTGGGTAAAAGTGCAAACCGATAGCTGCAGAAGTAGGAATAATGGCACC 1039 Query 68156 AGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTC--TCTG--------- 68204 ||||| || ||||| ||||| | || || || | ||||||||| || | Sbjct 1038 TGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCAATCCGAAACGGTTT 979 Query 68205 -----ATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTG 68259 |||||||| ||||| |||||||| || |||||||| ||||| | || |||| Sbjct 978 CACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAAAACAG-AAGT-- 922 Query 68260 CTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 ||| | | | | ||| |||||||| ||||| ||||| |||| Sbjct 921 -TGCGGTCAATAGGTTAGG-ATCATCAA-ACACCAAACCATCCAA 880 >seq6888 Length=4081 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/109 (80%), Gaps = 5/109 (5%) Strand=Plus/Minus Query 67707 TCAGTAGTTTCTCTGATAAGAGAAGAAG--TAACAAGAGAACCGTGCATAGCACT-AAAG 67763 || || ||||| ||||| | | ||||| || |||| ||||| ||||||||||| ||| Sbjct 601 TCTGTGGTTTCCCTGATCAAACTAGAAGCTTACCAAG-GAACCATGCATAGCACTGAAAT 543 Query 67764 AGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCA 67812 || || || ||||||||||| ||||| || | |||||| |||||||||| Sbjct 542 AGGGAGCCGCCGAATACACCAGCTACACCTA-CATATGAAATGGGTGCA 495 >seq101245 Length=1004 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/103 (79%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCC-AA 67416 |||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| || || Sbjct 694 AGCAGCTAGGTCTAGAGGGAAGTTCTGAGCATTACGTTCATGCATAACTTCCATACCAAA 635 Query 67417 GT---CCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCAC 67456 || | || | | ||| ||| || ||||||||| ||| || Sbjct 634 GTTAGCTCGCACGGCTAATGATATCAGCCCAAGTATTAATTAC 592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565594492328160