Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq162968 123 4e-23 seq38015 122 2e-22 seq55212 118 2e-21 seq1864 113 8e-20 seq185014 105 1e-17 seq63669 105 1e-17 seq156471 104 4e-17 seq21302 102 1e-16 seq169900 100 5e-16 seq76882 93.3 8e-14 >seq162968 Length=322 Score = 123 bits (136), Expect = 4e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| |||| || ||||| ||||| |||| ||||||||||||||||| || ||||| || Sbjct 116 ATCTTCTAGCTGCTTTCCAGCAAAGATTAGCCTCTGTTGATCAGGAGGAATCCCTTCCTT 175 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| ||||| | ||| | ||| ||| ||||| || || ||||| ||||| || Sbjct 176 GTCTTGAATTTTTGCTTTGACGTTTTCAATTGTATCCGAGCTTTCTACTTCAAGAGTAAT 235 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| ||||| |||||||| ||||| Sbjct 236 GGTCTTCCCTGTTAGGGTTTTGACAAATATCTGCAT 271 >seq38015 Length=2403 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || |||| ||||||||| | ||| || ||| || ||||| | || || || ||| Sbjct 2188 AGAACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAGTCCGCCAATGTCCTTCCATCT 2247 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | ||||| || |||||||| | ||||| ||||| ||||| |||||||||||||| Sbjct 2248 TCCAGCTGTTTGCCTGCAAAAATCAGCCTCTGCTGATCGGGAGGGATTCCTTCTTTATCC 2307 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || || | || | ||| || || ||||| ||| ||||| ||||| || || Sbjct 2308 TGAATCTTCGCCTTCACATTGTCGATTGTGTCGGAGCTCTCGACTTCCAGAGTGATCGTC 2367 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || || |||||||| Sbjct 2368 TTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 2399 >seq55212 Length=5247 Score = 118 bits (130), Expect = 2e-21 Identities = 189/269 (70%), Gaps = 3/269 (1%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | || || || || || | ||| | ||| || ||||| Sbjct 2765 AATTTGCATTCCACCACGAAGCCGGAGGACAAGGTGAAGTGTGGACTCCTTCTGGATATT 2706 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | || || ||| ||| || | |||||||||||||| || | ||||| || Sbjct 2705 GTAATCCGCTAGGGTCCTACCATCTTCGAGCTGTTTTCCGGCAAAGATCAGCCTCTGCTG 2646 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || |||||||| |||||||| || || | || | ||| || |||||||| Sbjct 2645 ATCTGGTGGGATTCCTTCCTTATCTTGAATCTTAGCCTTAACATTATCGATGGTATCGGA 2586 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | ||| || || ||||| || || || || ||||| || || ||||| || ||||| | Sbjct 2585 ACTCTCGACCTCAAGAGTAATCGTCTTGCCAGTTAGAGTCTTGACAAAGATCTGCATCTG 2526 Query 193364 ATTAGTAAAATAATTATTTTAAATAATAT 193392 |||| ||| | || || ||||||||| Sbjct 2525 ATTA-TAAGAAAA--GATTCAAATAATAT 2500 Score = 111 bits (122), Expect = 3e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| | | |||||||| | || | || || ||||| || || Sbjct 2986 ATCCCACCTCTCAACCTCAAAACCAGATGTAGGGTCGATTCCTTCTGGATATTGTAATCA 2927 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| | || || | ||| || || ||||| || || | ||| || |||||| Sbjct 2926 GCTAGGGTTCGACCGTCCTCGAGTTGCTTCCCAGCAAAGATCAAACGCTGCTGGTCAGGA 2867 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || |||| || | ||| || ||||| || |||| Sbjct 2866 GGGATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTATCCGAGCTCTCA 2807 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || ||||| || || |||||||| ||||| ||||||||| Sbjct 2806 ACTTCAAGGGTGATGGTTTTTCCGGTGAGCGTTTTCACAAAAATTTGCATT 2756 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| | | |||||||| | || | ||| || |||||| || || Sbjct 3467 ATCCCACCTCTCAACCTCAAAACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAATCA 3408 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || ||| || ||| |||| || || || ||||| || || | |||||| || ||| Sbjct 3407 GCTAGCGTCCTCCCATCTTCTAGCTGCTTCCCAGCAAAGATCAAGCGCTGTTGGTCCGGA 3348 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| ||||| || || || | || | ||| ||| || || ||| ||| Sbjct 3347 GGAATTCCTTCCTTATCCTGAATCTTTGCCTTGACATTGTCAATCGTGTCTGAACTTTCA 3288 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || || || || || || || ||||| Sbjct 3287 ACTTCGAGTGTAATGGTCTTTCCAGTAAGAGTCTTCACGAAAATCTGCAT 3238 >seq1864 Length=9564 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||||||||| || || ||||| | || | ||| || |||||| ||||| Sbjct 3375 ATCCCACCTCTCAATCGCAGCACGAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCC 3434 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||||| ||| || | ||||| || ||||| || ||||| || ||||| ||| Sbjct 3435 GCCAGTGTTCTGCCATCCTCAAGCTGTTTGCCTGCAAAGATCAATCTTTGCTGATCCGGA 3494 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | || | ||| || || || ||| |||| Sbjct 3495 GGGATACCTTCCTTGTCTTGAATCTTTGCCTTCACATTATCGATGGTGTCTGAACTCTCA 3554 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || || || || || | || || |||||||| ||||| Sbjct 3555 ACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAATATCTGCAT 3604 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| || || || ||||| | |||| ||||| ||||| || || Sbjct 3603 ATCCCACCTCTCAAGCGCAGCACGAGATGAAGGGTAGATTCTTTTTGGATATTGTAATCA 3662 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | || || || ||||| || |||||||| ||||| ||| Sbjct 3663 GCCAGTGTCCTGCCATCTTCAAGCTGCTTGCCTGCAAAGATCAATCTCTGCTGATCCGGA 3722 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | || | ||| || || | ||| |||| Sbjct 3723 GGGATACCTTCCTTGTCTTGAATCTTTGCCTTCACATTATCGATGGTGTTTGAACTCTCA 3782 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || || || ||||| | || || ||||| || ||||| Sbjct 3783 ACCTCCAAAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAAATCTGCAT 3832 >seq185014 Length=332 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || | | ||| || ||||| || || |||||||| ||||| ||| Sbjct 319 TGCTTTCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGGATGCCTTCTTTGTCTTGAATT 260 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| ||||| ||||| || |||||||| || || ||||| || Sbjct 259 TTGGCCTTCACATTATCGATAGTGTCGGAGCTTTCGACTTCTAGGGTGATGGTTTTCCCG 200 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||||||||| || ||||| Sbjct 199 GTTAGGGTTTTTACAAAGATCTGCAT 174 >seq63669 Length=360 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || | | || ||||| || || |||||||| |||||||| ||| Sbjct 249 TGCTTTCCGGCAAAGATGAGACGTTGCTGATCTGGGGGGATTCCTTCCTTATCTTGAATT 190 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | |||| ||| ||||||||| ||| |||||||| || || || ||||| || Sbjct 189 TTTGCCTTTACATTGTCAATAGTATCCGAACTTTCAACTTCGAGGGTGATGGTTTTTCCA 130 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || ||||| Sbjct 129 GTTAGGGTTTTCACGAAGATCTGCAT 104 >seq156471 Length=3476 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||||||||| || || ||||| | || | ||||| || || || || Sbjct 2129 ATCCCACCTCTCAATCGCAGCACAAGATGAAGGGTCGATTCTTTTTGTATGTTGTAATCC 2070 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||||| ||| || | |||||| || |||||||| ||||| || ||||| ||| Sbjct 2069 GCCAGTGTTCTGCCATCCTCGAGTTGTTTGCCTGCAAAAATCAATCTTTGCTGATCCGGA 2010 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| ||||| | || | ||| | || ||||| |||| Sbjct 2009 GGGATACCTTCCTTGTCTTGGATTTTTGCCTTCACATTGTCGACTGTGTCGGAGCTCTCA 1950 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || || || || || | || || ||||| || ||||| Sbjct 1949 ACCTCCAAAGTGATGGTCTTCCCCGTCAAGGTCTTCACAAAAATCTGCAT 1900 >seq21302 Length=5313 Score = 102 bits (112), Expect = 1e-16 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||||| ||| || || ||||| | || | || || || || Sbjct 4231 ATTTGCATACCACCTCTCAGTCGCAGCACAAGATGAAGGGTCGATTCCTTTTGTATGTTG 4172 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | | |||||| ||| || | ||||| || ||||| || || ||||| ||| Sbjct 4171 TAATCCGCCAGCGTTCTGCCATCTTCAAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGA 4112 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || ||||||||||| | || | ||| | || ||||| Sbjct 4111 TCCGGAGGGATCCCTTCCTTGTCTTGTATTTTCGCCTTAACATTGTCGACTGTGTCGGAG 4052 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || | ||| || || || || || | || || ||||| || ||||| Sbjct 4051 CTCTCAACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAAATCTGCAT 3996 Score = 84.2 bits (92), Expect = 4e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||| | || | ||| || ||||||||||| | | || | | Sbjct 3754 CGGAGGACAAGATGGAGGGTGGACTCCTTTTGGATATTATAGTCAGCGAGGGTACGGCCA 3695 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||| || ||||| || | ||||| || || ||||| || ||||| || Sbjct 3694 TCTTCGAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGGATCCCTTCCTTG 3635 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | || | ||| ||| ||||| ||| || ||||| || ||||| Sbjct 3634 TCTTGGATTTTTGCCTTGACATTGTCAATTGTATCCGAACTTTCGACTTCAAGGGTTATC 3575 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || || |||||| Sbjct 3574 GTCTTGCCAGTGAGAGTCTTAACGAAAATCTGCATT 3539 >seq169900 Length=516 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || |||| || | || | |||||| ||| || ||||| Sbjct 202 ATACCACCACGGAGACGGAGCACCAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAGTCA 261 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || |||||||| || || | | ||||| ||||| Sbjct 262 GCAAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATCAGACGTTGTTGGTCAGGG 321 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| ||||||| || | || |||||||||||| || Sbjct 322 GGGATGCCTTCTTTGTCTTGAATTTTGGCCTTCACGTTATCAATAGTATCGGAGCTTTCG 381 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || ||||| || ||||| ||||| || || |||||||| Sbjct 382 ACTTCGAGGGTGATGGTTTTTCCGGTTAGGGTTTTAACGAAGATTTGCAT 431 >seq76882 Length=309 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||||||||| || | | ||| || |||||||| || |||||||| ||||| ||| Sbjct 266 TGTTTTCCGGCAAATATAAGGCGCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGAATT 207 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | || |||||| || || || ||||| || || || ||||| || Sbjct 206 TTTGCCTTGACGTTGTCAATAGTGTCAGAGCTTTCGACTTCGAGGGTGATTGTTTTCCCG 147 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || ||||| Sbjct 146 GTGAGGGTTTTGACAAAGATCTGCAT 121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897507869584320