Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq169900 105 1e-17 seq162968 105 1e-17 seq1864 98.7 2e-15 seq156471 93.3 8e-14 seq104136 91.5 3e-13 seq119584 86.0 1e-11 seq38015 84.2 4e-11 >seq169900 Length=516 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 |||||||||||||| || | | ||| |||||||| || || |||||||| ||||| ||| Sbjct 58 TGTTTACCAGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATCCCTTCTTTGTCTTGAATT 117 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || || || ||||| || || ||| ||||| ||||| |||||||| ||| Sbjct 118 TTGGCCTTCACGTTGTCGATAGTGTCGGAGCTTTCCACTTCAAGAGTGATGGTTTTTCCA 177 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 |||| || || | |||||||||||| Sbjct 178 GTTAGGGTCTTGACGAATATCTGCAT 203 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || || || | ||| | |||||| ||| || || || Sbjct 202 ATACCACCACGGAGACGGAGCACCAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAGTCA 261 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | || || || || || || | | ||||||||||| Sbjct 262 GCAAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATCAGACGTTGTTGGTCAGGG 321 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| || || ||| |||||||| || ||| Sbjct 322 GGGATGCCTTCTTTGTCTTGAATTTTGGCCTTCACGTTATCAATAGTATCGGAGCTTTCG 381 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || |||||||| || |||| ||||||| ||| || ||||| Sbjct 382 ACTTCGAGGGTGATGGTTTTTCCGGTTAGGGTTTTAACGAAGATTTGCAT 431 >seq162968 Length=322 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || |||||||| |||| |||||||| ||||| || || ||||| || ||||| ||| Sbjct 126 TGCTTTCCAGCAAAGATTAGCCTCTGTTGATCAGGAGGAATCCCTTCCTTGTCTTGAATT 185 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| || || || ||||| || ||||||||| ||||||||||| || || Sbjct 186 TTTGCTTTGACGTTTTCAATTGTATCCGAGCTTTCTACTTCAAGAGTAATGGTCTTCCCT 245 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 |||| ||||| | ||||||||||| Sbjct 246 GTTAGGGTTTTGACAAATATCTGCAT 271 >seq1864 Length=9564 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||||||||| ||||| || ||||| || || || ||||| || || ||||| Sbjct 3915 TGCTTGCCAGCAAAAATCAATCTTTGCTGGTCTGGAGGGATCCCTTCCTTGTCCTGTATC 3974 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| ||||| || || ||||| ||||||||| | ||| ||||| || ||| Sbjct 3975 TTGGCTTTCACATTGTCGATGGTGTCTGAGCTTTCTACTTCCAAAGTTATGGTCTTTCCA 4034 Query 172044 GTTAATGTTTTAATGAATATCTGCATT 172070 || || || || | ||| ||||||||| Sbjct 4035 GTCAAGGTCTTCACGAAAATCTGCATT 4061 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || |||||||| || || |||| ||| || || || || || |||||||| ||||| || Sbjct 3231 TGCTTACCAGCGAAGATCAATCGCTGCTGATCTGGAGGAATCCCTTCTTTGTCTTGAATC 3290 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || |||||| || || ||||| || || || ||||| |||||||| ||| Sbjct 3291 TTTGCCTTAACATTATCAATGGTGTCTGAACTCTCAACCTCCAGAGTTATGGTTTTCCCA 3350 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || | || |||||||| Sbjct 3351 GTTAATGTCTTGACAAAGATCTGCAT 3376 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | |||||| ||||||||||||| ||||| || || || || |||||||| || Sbjct 4134 TCTTCGAGTTGTTTTCCAGCAAAAATTAGCCTCTGCTGATCTGGAGGAATTCCTTCCTTG 4193 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || ||| ||| |||| ||||| || || || || || |||||||| Sbjct 4194 TCTTGAATCTTAGCTTTGACATCGTCAATAGTGTCAGAGCTCTCAACCTCGAGAGTAATT 4253 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| | || |||| || || ||||| Sbjct 4254 GTCTTGCCAGTAAGGGTCTTAACAAAGATTTGCAT 4288 >seq156471 Length=3476 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || | || | || | ||| | || | |||||| ||||| |||||| Sbjct 1901 ATCCCACCCCTCAAGCGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATATTGTAATCT 1842 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | ||| || ||||||||||| ||||| || ||||| || Sbjct 1841 GCAAGTGTTCTACCATCTTCGAGTTGCTTTCCAGCAAAAATCAATCTTTGCTGGTCTGGA 1782 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || ||||| || || || || ||| || ||||| ||| Sbjct 1781 GGGATCCCTTCCTTGTCCTGTATCTTGGCCTTCACGTTGTCTATGGTGTCTGAGCTTTCG 1722 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | || || || || ||||||| || |||| ||| ||||||||| Sbjct 1721 ACTTCCAAGGTGATCGTCTTTCCAGTTAGGGTCTTAACGAAAATCTGCATT 1671 >seq104136 Length=768 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| || || | || | || | ||||| || || ||||| |||||| Sbjct 389 ATCCCACCTCTGAGGCGGAGGACAAGGTGGAGAGTAGACTGCTTCTGTATATTGTAATCT 330 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | || ||||||||||| || | | ||| |||||| | Sbjct 329 GCAAGGGTGCGGCCATCTTCAAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCATGA 270 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| ||||| ||||| ||| |||||| || || || || || Sbjct 269 GGAATTCCCTCTTTGTCTTGGATTTTGGCTTTGACATTATCGATGGTGTCAGAACTCTCA 210 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||||||||| || ||||| | || || | || || ||||| Sbjct 209 ACTTCGAGAGTAATGGTCTTGCCAGTGAGCGTCTTGACAAAGATTTGCAT 160 >seq119584 Length=3068 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||| | |||| || | || |||||||||||||||||||| || | ||| Sbjct 2338 ATATTGTAATCCGCCAAAGTTCTGCCATCTTCCAATTGTTTACCAGCAAATATCAGCCTC 2279 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 || |||||||| || |||||||||||||| || Sbjct 2278 TGCTGGTCAGGAGGGATTCCTTCTTTATCCTG 2247 >seq38015 Length=2403 Score = 84.2 bits (92), Expect = 4e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||| || || | ||| || ||| || || || | || | | | | || ||| Sbjct 2191 ACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAGTCCGCCAATGTCCTTCCATCTTCC 2250 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | ||||| || |||||||| | ||||| || || || || |||||||||||||| || Sbjct 2251 AGCTGTTTGCCTGCAAAAATCAGCCTCTGCTGATCGGGAGGGATTCCTTCTTTATCCTGA 2310 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || || ||||| || || || || || ||||| ||||| || || || Sbjct 2311 ATCTTCGCCTTCACATTGTCGATTGTGTCGGAGCTCTCGACTTCCAGAGTGATCGTCTTC 2370 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||||| | ||| || ||||| Sbjct 2371 CCAGTTAGGGTTTTGACGAAGATTTGCAT 2399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902976390760800