Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq87019 165 2e-35 seq130355 138 3e-27 seq29771 114 4e-20 seq21692 105 2e-17 seq47124 98.7 3e-15 seq132179 96.9 1e-14 seq140322 91.5 4e-13 >seq87019 Length=1933 Score = 165 bits (182), Expect = 2e-35 Identities = 430/647 (66%), Gaps = 9/647 (1%) Strand=Plus/Plus Query 155592 GACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAGCA 155650 || || ||||| || || || || |||| || | | || |||| | ||||| ||| Sbjct 1286 GAAGCGAGATTGCAGACAGCTGTTTCCTCTGGACTTG-TGAATTCGATGATCTCTGTGCA 1344 Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710 || |||||| |||||| || || | || | ||| ||| || |||||||| | ||| Sbjct 1345 TAGATTAGAAGACTTGATAGTTCCAAGGTTTTGCTGATTACTCTTTCTGTTACAGGAATC 1404 Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAG 155770 |||||| || ||||| || | ||||| || ||||| || |||| ||| | ||| || Sbjct 1405 CTTGTAGAGCATGTAGGGATTGCCTGTTTCAATCTGGGCTTCCAAAATAGCAAACCACAG 1464 Query 155771 GTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGT 155830 | | || |||| | | || | || || |||||||| | |||| | | Sbjct 1465 CTTCTGTGCTTTAACAACACTCCTAGATTTTCCCTCAGACTCATAGCCTGTGTACAAC-T 1523 Query 155831 TCGGTAA-TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCG 155889 || || | ||||| |||| ||| || |||||| || || ||||||||||| | Sbjct 1524 TCTCAAACTTTTCACCCCAACAGTCAGCAAGGCCAGGGGCCTCATTAGGGCAAAACAGGG 1583 Query 155890 ACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGA 155949 ||||| ||| | ||||||| ||| || | ||| ||||| | |||| Sbjct 1584 ACCAATCCCCATTCTCTTGCACACGCTTCATGAACAAATCTGGGATCCAAAGGCCGTAGA 1643 Query 155950 AAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCT 156009 | | || | || | ||| || | || |||||||||| | |||| | || Sbjct 1644 ACAAATCTCGAGCTCTGTTCTCTTCCTTTCCATGATTCTTCCTCAAGTCTAGCCAATCAA 1703 Query 156010 CAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---AC 156066 ||||| | ||| |||||||| ||| ||||||||| ||| || || ||||| || Sbjct 1704 ATATATCTGCATGCCATGGCTCCAAATAAATAGCAAAAGCACCCTTTCTTTTGCCTCCAC 1763 Query 156067 CCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGG 156126 |||||||||| || ||||| || | |||||| || | ||||| |||| || ||||||| Sbjct 1764 CCTGATCTACGTATCGAGCTGTGTCATTGAACACCCTCAGCATCGGAACTATGCCATTGG 1823 Query 156127 AAGTGCCATTGGTTCCGCGAATAT-GCGAACCAGATGAGCGAACATTATGAATATGTAGT 156185 | || ||||| ||||| | ||| | || ||| || || | ||| |||||| | | Sbjct 1824 ATGTACCATTAGTTCCCCTAATGTAGCTGCCCA-TTGCTCGTATATTGTGAATAGACAAT 1882 Query 156186 CCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGT 156232 ||||||||||| | ||| |||| || |||||||||| ||| Sbjct 1883 CCAATACCACCCGCAGTTTTGCTTATTTCTGCACATTCCTTTAGAGT 1929 >seq130355 Length=1992 Score = 138 bits (152), Expect = 3e-27 Identities = 339/505 (67%), Gaps = 17/505 (3%) Strand=Plus/Plus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||| | ||||| ||| | || || || |||| ||| || |||||||||||| | Sbjct 773 ATCAAAGCGACCAGGCCGACGAAGAGCAGGATCCAATACATCTGCCCTGTTTGTTGCTCC 832 Query 288912 CAATACAACAATAGATTCGGTTTGCTT--AAATCCATCCATACTTGTTAAAATTTGATTA 288969 |||||||| | | | | | ||| ||| ||||| | |||||||| ||||||| Sbjct 833 CAATACAATGACTGTT--GAACTACTTTCAAAACCATCAAGCTCTGTTAAAAGTTGATTA 890 Query 288970 AGTGTTTGTTCCCTTTCATCATT--TGAACCTCTTGAATCACCCGAATCGCTCCtttttt 289027 || || ||||| | |||||||| ||| || | | || ||| | | ||| Sbjct 891 AGAGTCTGTTCACGCTCATCATTGCTGACACTGCGAAGCCGTCC--ATCACGACCTTTGG 948 Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 |||| |||||||| || |||||||| | | | | || | | | | | ||| | Sbjct 949 ---CAACCGCATCAATCTCATCAATGAAGACAATAGAAGGTGCCTCTCTTTTTGCACGGG 1005 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 ||| | ||||| || | || |||||| | ||| ||||| | || ||||||||| | Sbjct 1006 TAAAAAGATCTCTAACCCTGGCTGCTCCCATACCGACATAAAGCTCAACAAATTCACTTG 1065 Query 289148 CGGATA--CTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | || ||| ||||| | |||| ||| || ||||| || || | || |||||||| Sbjct 1066 CTGAACAGCTT--ATGAAAGGCACATCTGCCTCTCCTGCCACAGCTTTTGCAAGAAGTGT 1123 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAG 289264 ||| ||||| |||||||| || | | ||||| ||| | || | | || || ||| | Sbjct 1124 CTTTCCTGTACCAGGTGGCCCTACAAGTAGAATTCCATGAGGAGGTCTAGCACCAAGCCG 1183 Query 289265 ACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 |||| |||||| | || || || || || || ||||| | || | ||||| | Sbjct 1184 -TGTATAGCGCTCAGGATTTTTCAAGAAATCCACTATCTCCTCCAACTCTTCCTTTGCTT 1242 Query 289325 CATCACATCCTGCTACATCAGCAAA 289349 ||||| ||||| ||||||||||| Sbjct 1243 CATCAACACCTGCCACATCAGCAAA 1267 >seq29771 Length=7919 Score = 114 bits (126), Expect = 4e-20 Identities = 197/284 (69%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATAC-TCTT--GATTAAACG 302594 ||| || || ||| |||||| || ||| || ||||||||| || || || || Sbjct 4744 ATTCCTAACTGTCCCATCATACTTAACCATGATATCTTCCATAGATCGGAAGACCAATCG 4803 Query 302595 ACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACC 302654 | ||||||||| ||||| ||| ||||| || || |||||||| ||||| | | ||| Sbjct 4804 CCTCTGAATATATCCAGTCTCAGAAGTTTTCACTGCAGTATCAATAAGACCTTCCCTACC 4863 Query 302655 ACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAAC 302714 |||||| ||||||||||| | ||||| || | || | || | | ||| |||| || Sbjct 4864 ACCCATGGCATGGAAGAAGAACTCTTGAGGAGACAATCCTCGAAGATATGAGTTCTCCAC 4923 Query 302715 GAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTC 302774 |||||||| ||| || || || ||||| ||||| || || || | | | | Sbjct 4924 AAAACCACGGCTCTCAGGACCATAATCATCTTTGGTGAAGTGAGGGAGTGTGCGATCCAC 4983 Query 302775 ATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818 | | || | || || ||||| || ||||| |||||||| |||| Sbjct 4984 AAAACCAAACGGAATTCGCTTGCCTTCAACATTCTGCTGGCCCA 5027 >seq21692 Length=6131 Score = 105 bits (116), Expect = 2e-17 Identities = 333/509 (65%), Gaps = 18/509 (4%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 ||||||||||| || | ||| || || | || | ||||| || | || |||||| Sbjct 2868 CTATCAAACCTTCCTGGACGTAACAAGGCAGAATCAAGAATATCTGCACGATTAGTTGCT 2927 Query 288910 GCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCATCCATACTTGTTAAAATTTGAT 288967 || | ||||| | | | | ||| ||| ||| |||||||| ||| || | || | Sbjct 2928 GCAATTACAATCACACCAGT--GTTACCTTCAAAGCCATCCATTTCTGTCAAGAGCTGGT 2985 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttt 289027 | ||||| ||||| || || ||||| |||| |||| | | | | | ||| Sbjct 2986 TGAGTGTCTGTTCTCTCTCGTCATTC---CCTC------CACCAATACCAGTTCCTCTTT 3036 Query 289028 tAC---CAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAA 289084 || |||||||||||||||| |||| || | | ||| || | |||| | || Sbjct 3037 GACGCCCAACAGCATCAATTTCATCAACAAACACAATACATGGGGCGTTTTCCTTTGCTT 3096 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 | || | || | || | || ||||||| ||||||| |||| || ||||| |||| Sbjct 3097 TCTTGAAAAGGTCGCGGACCCTTGAAGCTCCAACACCAACAAACATCTCAACAAACTCAG 3156 Query 289145 AAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 || | || | | || | ||| | |||| |||||| || || | ||| | || || | Sbjct 3157 AACCTGAAA-TCGAGAAGAAAGGTACACCTGCTTCACCAGCAATAGCCTTGGCTAGCAAG 3215 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCA 289263 ||||| ||||| || || || || | | ||||||||||| || | || || || Sbjct 3216 GTCTTCCCTGTACCCGGAGGACCAACAAGAAGAACTCCCTTAGGAATACGAGCACCTACA 3275 Query 289264 GACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 | || | |||| || |||| || || || || | ||| ||| || | ||||| Sbjct 3276 GCAGTAAACCTCTCGGGCTTCTTCAAGAACTCCACCACCTCCACAAAATCTTGCTTTGCT 3335 Query 289324 TCATCACATCCTGCTACATCAGCAAAAGT 289352 ||||| | || || |||||| ||||||| Sbjct 3336 TCATCCCCCCCAGCCACATCATCAAAAGT 3364 >seq47124 Length=10926 Score = 98.7 bits (108), Expect = 3e-15 Identities = 218/320 (68%), Gaps = 8/320 (3%) Strand=Plus/Plus Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCG-CAATT 289086 |||||| ||||||||||| || ||||| || | || || | | ||| || | | || Sbjct 612 TACCAATTGCATCAATTTCATCTATGAATATGATACTAGGTGCACATTGCCTAGCCTCTT 671 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 | || || || || || | || | |||| |||||| |||| || | || |||||| Sbjct 672 GGAACAAACTC-CTAACCCTTGAGGGCCCAACTCCAACAAACATCTCCATGAAATCAGAA 730 Query 289147 GCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | |||| | || | || | ||| | ||| || ||| ||| | || || || || Sbjct 731 CCAGATA-TGGACAGAAAGGGCACACCAGATTCACCAGCTGTTGCTTTTGCTAGGAGCGT 789 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 |||||||| ||||| ||||| | |||||| |||| || || | ||| ||||| |||| Sbjct 790 TTTACCTGTCCCAGGAGGTCCAACCAATAGAGCTCCTTTAGGGATTTTGGCCCC--CAGA 847 Query 289266 --CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 || |||||| | || |||||| || | |||| ||| || || | ||||| Sbjct 848 TCCTCATATTTTTTTGGATTCTTTAGGAAGTGAACAAACTCCATAATCTCTTGCTTTGCT 907 Query 289324 TCATCACATCCTGCTACATC 289343 |||||||| || || ||||| Sbjct 908 TCATCACAACCAGCAACATC 927 >seq132179 Length=329 Score = 96.9 bits (106), Expect = 1e-14 Identities = 188/274 (69%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| | ||| |||||| ||| | ||||| | || || ||||| || |||||| || Sbjct 60 CATGACGTCCTCCATAGCCTTCACCAAACGCCTTTGGATGTAACCTGTCTCAGATGTCTT 119 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| || ||||| ||||| | | ||| ||||| ||||||||||| | ||| | || Sbjct 120 CACAGCCGTGTCAATCAGACCTTCCCTACCTCCCATGGCATGGAAGAAGAACTCCTGAGG 179 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCT--CGGGC--GAATCGT 302740 || || | | | | || |||| || |||||||| || | ||| | |||||| Sbjct 180 AGTGAGACCTCGCAGATACGAATTCTCCACAAAACCACG-GCTTTCCGGACCATAATCGT 238 Query 302741 CGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCAT 302800 | |||||| || || |||| ||| | | | | | || | ||||| ||||| || | Sbjct 239 C---CTTGGTGAAATGAGGCAAGGTGCGATCCACGAATCCAAACGGGATTCGCTTCCCCT 295 Query 302801 CAACGTTCTGCTGTCCCAGGCACGAAATCATCTG 302834 | || |||||||| || | || | |||||| || Sbjct 296 CCACATTCTGCTGCCCAACACAGGCAATCATTTG 329 >seq140322 Length=1262 Score = 91.5 bits (100), Expect = 4e-13 Identities = 175/256 (68%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 251413 CCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTG 251472 ||||| | | ||| ||||| | || ||||||||| | ||| | |||| |||| Sbjct 557 CCACAACTCTCACAAACATGTATTCTATAAGCATCACTTTGATCAAACAGCCTCTCCTTC 498 Query 251473 GTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGA 251532 || | | || || || | ||||||||| || | ||||||||||| ||||| || Sbjct 497 AGAAAATGTGCGGCTCCATGCGCAATCATACAGTCTCTTTCCATTTCACCAAAACGGAGC 438 Query 251533 CCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATG 251592 |||||||| || | ||| ||||| ||||| || | ||||||| | | ||| || | Sbjct 437 CCACCATCTCGCGACCTTCCCTCAGCAGGTTGCCTAGTGAGAATCTGAACAGGGCC--TC 380 Query 251593 GA--GCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGAC 251650 || ||| ||| ||| |||| |||||||| || | | ||||||| | | ||| | Sbjct 379 GACCACGGGAATGAATCTTGTCATCAACCATATGTTTCAACCTCTGGTAGTAAGTGGGGC 320 Query 251651 CGATGAAGATGCTCGA 251666 ||| ||| || |||| Sbjct 319 CGAGGAAAATCATCGA 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1468218124717212