Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq42153 138 1e-26 seq2278 104 3e-16 >seq42153 Length=9390 Score = 138 bits (152), Expect = 1e-26 Identities = 214/285 (75%), Gaps = 18/285 (6%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGC-CCTCACCTCTGCCACTTG 869691 ||||||||||||||||||||||||||||| ||||| ||||| | | |||| | || || Sbjct 5151 GAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGGCGCGCCGCCTC-GAGACCTG 5209 Query 869692 -GACCTCCTTCATGAACCGGCCGGC-CAGG--TTCTCGGCCACGATGCCGTCGCTGGCGG 869747 |||||| ||||||| |||||||| | | ||||| |||||||||||| ||||| Sbjct 5210 CCACCTCC-TCATGAAACGGCCGGCTGATGTATTCTCCAGGACGATGCCGTCG-AGGCGG 5267 Query 869748 CGAA-AAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCA- 869805 |||| || || || |||||| | | || || ||||||| | |||| ||| |||| Sbjct 5268 CGAAGCAAGGCGAGCACGTGC-TAAGGAAATGCTTCTCGTCGCGGGTGAGGGACTCCCAT 5326 Query 869806 GTGGACGGT-GTC--GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGC 869862 |||| || | ||| ||| | ||| |||||||| || |||||| | ||||| || Sbjct 5327 GTGG-CGCTGGTCCTCGCGACCAAGTCGACCTCCTCCGCCGTCCAGGAAGGAGCCTCCGC 5385 Query 869863 CTT-TTTGTA-CATCTCCCATACTTGCTGGTAGC-GGATAGGGAA 869904 ||| | |||| ||||||||||||||| |||||| | || ||||| Sbjct 5386 CTTCTGTGTACCATCTCCCATACTTGAGGGTAGCTGAATCGGGAA 5430 Score = 109 bits (120), Expect = 7e-18 Identities = 181/259 (70%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 869194 GATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 869253 ||||| ||| || ||| | || || |||||||| ||||||||||| |||||||| || Sbjct 4885 GATCAATTCATTCGAAAACGTCAGCCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAAAT 4944 Query 869254 GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTC 869313 ||||||||| || || ||||| ||||| || || ||| || ||| | | | || ||| Sbjct 4945 GGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCAACGCACGCGAAGGCAACCAACCTCTC 5004 Query 869314 GGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCT 869373 || || || || | ||| || |||||| ||| ||||||| ||||| || Sbjct 5005 CGCGAACGTCTC----CGATCC--GTCGATCCAGCTCAGCGCCCAGCTCGCCTTCCTCTC 5058 Query 869374 CACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTT-GA 869432 || | || | |||||||| ||||| |||||| || ||| || ||| ||| || Sbjct 5059 GACGCAAGGGATGGTGTCGATCGCGCGGAAGAGGCGGCTCTTCTCCTCCGATCACTTGGA 5118 Query 869433 CATAGGTGTCGATCAGGAG 869451 ||||| |||| ||||| Sbjct 5119 TGTAGGTCTCGAGGAGGAG 5137 >seq2278 Length=4600 Score = 104 bits (114), Expect = 3e-16 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||| || ||||| | | || || | |||||||||||||||||||| | | ||| | Sbjct 1216 TGGCGAGCTCGCCAGGGAGGACGAGCCTGACGGCGGTCTGGATCTCGCGTGAGGTGATGG 1275 Query 1254406 T--GTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCAT 1254463 | ||| | ||||| || |||| || || | ||| || ||| |||| || Sbjct 1276 TAGGTTTC--TTGTTGTAGCGCGCGAGGCGCGACGACTCCATGGCGAGCTTCTCGAAGAT 1333 Query 1254464 GTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTG 1254523 |||||||| || |||||||| | ||||| |||| ||||||| || | ||| ||||| Sbjct 1334 GTCGTTGATGAAGCTGTTCATGATCCCCATCGCCTTGCTGGAGATCCCGATGTCCGGGTG 1393 Query 1254524 CACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||| ||||||||| | ||| Sbjct 1394 CACCTGCTTCAGCACCTTGAATATG 1418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6091475021567692