Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq38015 116 3e-21 seq156471 104 2e-17 seq169900 98.7 8e-16 seq53616 98.7 8e-16 seq38014 98.7 8e-16 seq21302 89.7 4e-13 seq63669 82.4 6e-11 seq1864 82.4 6e-11 >seq38015 Length=2403 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| |||| || || || || || | ||| ||| | Sbjct 2399 ATGCAAATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTGGAAGTCGAGAGCTCC 2340 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||||| || |||||||| | || ||||| Sbjct 2339 GACACAATCGACAATGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCCGATCAG 2280 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || |||| ||| || ||||||||||| |||| || ||| ||||||| |||||| Sbjct 2279 CAGAGGCTGATTTTTGCAGGCAAACAGCTGGAAGATGGAAGGACATTGGCGGACTACAAC 2220 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| || || || || ||||| |||| | || ||||| ||||||| Sbjct 2219 ATTCAGAAGGAGTCGACATTGCATTTGGTTCTGAGGCTGCGCGGGGGAA 2171 >seq156471 Length=3476 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || || || || ||||| || | || ||| | Sbjct 1900 ATGCAGATTTTTGTGAAGACCTTGACGGGGAAGACCATCACTTTGGAGGTTGAGAGCTCC 1959 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || |||| | | || || || || ||||| ||||| | || |||||| Sbjct 1960 GACACAGTCGACAATGTGAAGGCAAAAATCCAAGACAAGGAAGGTATCCCTCCGGATCAG 2019 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| ||| || ||||| || ||||||| ||||||| |||||||||||||| Sbjct 2020 CAAAGATTGATTTTTGCAGGCAAACAACTCGAGGATGGCAGAACACTGGCGGATTACAAC 2079 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||||||||| || Sbjct 2080 ATACAAAAAGAATCGAC 2096 >seq169900 Length=516 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 |||||||| || || ||||| ||||||| |||||||| ||| ||||| || | || Sbjct 431 ATGCAAATCTTCGTTAAAACCCTAACCGGAAAAACCATCACCCTCGAAGTCGAAAGCTC- 373 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||||| | | | || || || ||| |||||||||||| | ||| || || Sbjct 372 CGATACTATTGATAACGTGAAGGCCAAAATTCAAGACAAAGAAGGCATCCCCCCTGACCA 313 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||| | || || | || || || ||||| || |||| | | || | || || ||||| Sbjct 312 ACAACGTCTGATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTTGCTGACTACAA 253 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||||||| || || | ||| ||||| Sbjct 252 CATTCAAAAAGAGTCAACTCTTCACTTGGTG 222 >seq53616 Length=2978 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| |||| || || || || || | ||| ||| | Sbjct 1525 ATGCAAATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTGGAAGTCGAGAGCTCC 1584 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||||| || || ||||| | || ||||| Sbjct 1585 GACACGATCGACAACGTGAAGGCGAAGATTCAGGATAAGGAAGGAATCCCTCCCGATCAG 1644 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| |||| || || || |||||||| |||| || || ||||||| |||||| Sbjct 1645 CAGAGACTGATTTTCGCAGGCAAGCAGCTGGAAGATGGAAGGACTTTGGCGGACTACAAC 1704 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || || || ||||| |||| | || ||||| || || Sbjct 1705 ATTCAAAAGGAGTCGACATTGCATTTGGTTCTCAGGCTGCGCGGCGG 1751 >seq38014 Length=3548 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| |||| || || || || || | ||| ||| | Sbjct 1209 ATGCAAATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTGGAAGTCGAGAGCTCC 1150 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| || || ||||| | || ||||| Sbjct 1149 GACACGATCGACAACGTGAAGGCGAAGATCCAGGATAAGGAAGGAATCCCTCCCGATCAG 1090 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || |||| ||| || || |||||||| |||| || || ||||||| |||||| Sbjct 1089 CAGAGGCTGATTTTTGCAGGCAAGCAGCTGGAAGATGGAAGGACTTTGGCGGACTACAAC 1030 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || || || ||||| ||||| | || ||||| || || Sbjct 1029 ATTCAAAAGGAGTCGACATTGCATTTGGTGCTGAGGCTGCGCGGCGG 983 >seq21302 Length=5313 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || || || || ||||| || | || ||| | Sbjct 3996 ATGCAGATTTTTGTGAAGACCTTGACTGGAAAGACCATCACTTTGGAGGTTGAGAGCTCC 4055 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || |||| | | || || ||| || ||||| ||||| | || |||||| Sbjct 4056 GACACAGTCGACAATGTTAAGGCGAAAATACAAGACAAGGAAGGGATCCCTCCGGATCAG 4115 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| || |||||||| || |||| |||||| |||||||||||||| Sbjct 4116 CAGAGGTTGATCTTTGCAGGCAAACAGCTTGAAGATGGCAGAACGCTGGCGGATTACAAC 4175 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| ||||| || | || | ||| | ||||| |||| || Sbjct 4176 ATACAAAAGGAATCGACCCTTCATCTTGTGCTGCGACTGAGAGGTGG 4222 >seq63669 Length=360 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| |||| || |||||||| ||| ||||| || | Sbjct 104 ATGCAGATCTTCGTGAAAACCCTAACTGGAAAAACCATCACCCTCGAAGTTGAAAGTTCG 163 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | | ||||| || ||| || || ||||| | ||| ||||| Sbjct 164 GATACTATTGACAATGTAAAGGCAAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAG 223 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || || | ||| || || ||||| || || | | | || | || || |||||| Sbjct 224 CAACGTCTCATCTTTGCCGGAAAGCAGCTTGAAGACGGCCGTACTCTTGCTGACTACAAC 283 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||||||| || || | ||| ||||| Sbjct 284 ATTCAAAAAGAGTCAACCCTTCACTTGGTG 313 >seq1864 Length=9564 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 110357 AAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAA 110416 |||||| ||||| ||||| | || |||||| || ||| | || | ||| || || Sbjct 3748 AAGATTCAAGACAAGGAAGGTATCCCTCCGGATCAGCAGAGATTGATCTTTGCAGGCAAG 3689 Query 110417 CAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTAC 110469 ||||| || |||| ||| ||| |||| |||||||| || |||||||||||||| Sbjct 3688 CAGCTTGAAGATGGCAGGACACTGGCTGATTACAATATCCAAAAAGAATCTAC 3636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411881206069868