Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq42153 170 3e-36 seq2278 145 1e-28 seq184441 114 2e-19 >seq42153 Length=9390 Score = 170 bits (188), Expect = 3e-36 Identities = 227/312 (73%), Gaps = 9/312 (3%) Strand=Plus/Plus Query 794355 GATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 794414 ||||||||| || ||| || || |||||||| ||||||||||| |||||||| || Sbjct 4885 GATCAATTCATTCGAAAACGTCAGCCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAAAT 4944 Query 794415 GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTC 794474 ||| ||||| || || ||||| ||||| || || ||| || ||| | || | || ||| Sbjct 4945 GGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCAACGCACGCGAAGGCAACCAACCTCTC 5004 Query 794475 GGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA-CTCTGCCTTTTTCC 794533 || || || ||| || || |||||| ||| |||||| ||| ||||| || Sbjct 5005 CGCGAACGTCTCCGATCC------GTCGATCCAGCTCAGCGCCCAGCTC-GCCTTCCTCT 5057 Query 794534 TCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTT-G 794592 || | || | |||||||| ||||| |||||| || |||||| ||| ||| | Sbjct 5058 CGACGCAAGGGATGGTGTCGATCGCGCGGAAGAGGCGGCTCTTCTCCTCCGATCACTTGG 5117 Query 794593 ACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGG 794652 | |||||| |||| |||||| ||| |||| ||||||||||| ||||||||||||||| Sbjct 5118 ATGTAGGTCTCGAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGG 5177 Query 794653 AAGCCATAAAAG 794664 || || || ||| Sbjct 5178 AACCCGTAGAAG 5189 Score = 100 bits (110), Expect = 4e-15 Identities = 167/225 (74%), Gaps = 15/225 (7%) Strand=Plus/Plus Query 796165 ACCTCCTTCATGAAGCGGCCGGCC-AGGT--TCTCAGCCACGATGCCGTCGCTGGCGGCG 796221 ||||||| |||||| |||||||| | || |||| |||||||||||| ||||||| Sbjct 5212 ACCTCCT-CATGAAACGGCCGGCTGATGTATTCTCCAGGACGATGCCGTCGA-GGCGGCG 5269 Query 796222 AAA-AAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGACCCA-GT 796279 || |||||||| ||||||| ||| || ||||||| | |||| || |||| || Sbjct 5270 AAGCAAGGCGAGCACGTGCTAAGGAAA-TGCTTCTCGTCGCGGGTGAGGGACTCCCATGT 5328 Query 796280 GGACCGTGTCGGCGC--CGAGGTCGACCTCCTCGGCGGTCCA-AAAGGAGGCCTCGGCCT 796336 || | ||| ||| | | |||||||||||| || ||||| ||||| ||||| |||| Sbjct 5329 GGCGCTGGTCCTCGCGACCAAGTCGACCTCCTCCGCCGTCCAGGAAGGA-GCCTCCGCCT 5387 Query 796337 T-TTTGTA-CATCTCCCATATCCGTTGGTAGC-GGATGGGGAACA 796378 | | |||| ||||||||||| | |||||| | || ||||||| Sbjct 5388 TCTGTGTACCATCTCCCATACTTGAGGGTAGCTGAATCGGGAACA 5432 >seq2278 Length=4600 Score = 145 bits (160), Expect = 1e-28 Identities = 175/236 (74%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||| || |||||||| ||||| ||||||||||| |||| || ||||| | | || Sbjct 1179 TTGGTAACCGCCTTGGTCCCCTCGGAGACGGCGTGTTTGGCGAGCTCGCCAGGGAGGACG 1238 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGT--GTTGCGCTTGTTAGTGCGCG 1485592 || | |||||||||||||||||||| | | ||| || ||| |||||| ||||| Sbjct 1239 AGCCTGACGGCGGTCTGGATCTCGCGTGAGGTGATGGTAGGTT--TCTTGTTGTAGCGCG 1296 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 | ||||| | ||| || ||| |||| |||||||||| || |||||||| Sbjct 1297 CGAGGCGCGACGACTCCATGGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCATGA 1356 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || ||||| ||| ||||||| || | ||| |||||||||||||| ||||||||| Sbjct 1357 TCCCCATCGCCTTGCTGGAGATCCCGATGTCCGGGTGCACCTGCTTCAGCACCTTG 1412 >seq184441 Length=1212 Score = 114 bits (126), Expect = 2e-19 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||||||| |||||||| || || |||||||||||| | || || |||||| | | | | Sbjct 883 TTGGTGACAGCCTTGGTCCCTTCAGAGACGGCGTGCTTTGCAAGCTCGCCGGGAAGCACC 942 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 || | |||||||||||| |||||||||| | ||| || |||||| ||| || Sbjct 943 AGCCTCACGGCGGTCTGAATCTCGCGGGAGGTGATGGTCGGCTTCTTGTTGTAGCGAGCG 1002 Query 1485595 AG-GCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAT 1485653 || || | | | ||| || |||| |||||||||| || ||||||||| Sbjct 1003 AGCTTGGAAGATTCCTGCGCCAAT-TTCTCGAAGATGTCGTTGATGAAGCTGTTCATGAT 1061 Query 1485654 CGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| | ||| |||| || || | ||||||||| |||||||| ||||||||| Sbjct 1062 GCCCATGGCCTTGCTGGATATACCGATGTCGGGGTGGACCTGCTTCAGCACCTTG 1116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7895942049294564