Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq87019 125 2e-23 seq29771 113 1e-19 seq42153 111 4e-19 >seq87019 Length=1933 Score = 125 bits (138), Expect = 2e-23 Identities = 215/309 (70%), Gaps = 5/309 (2%) Strand=Plus/Minus Query 110667 AAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATAT 110726 || ||| | || | ||| | ||||| ||| | || || ||||| ||||| || ||| Sbjct 1833 AATGGTACATCCAATGGCATAGTTCCGATGCTGAGGGTGTTCAATGACACAGCTCGATAC 1774 Query 110727 GTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCAT 110783 || |||| ||||| || ||||| || | |||||||| ||| | || || |||||| Sbjct 1773 GTAGATCAGGGTGGAGGCAAAAGAAAGGGTGCTTTTGCTATTTATTTGGAGCCATGGCAT 1714 Query 110784 TCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCA 110843 ||||||||||||| | |||| | | || ||||| ||| ||||| | ||||| Sbjct 1713 GCAGATATATTTGATTGGCTAGACTTGAGGAAGAATCATGGAAAGGAAGAGAACAGAGCT 1654 Query 110844 CGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAAT 110903 || ||||| || || | | ||||| ||||||| |||||||| ||||| ||||| ||| Sbjct 1653 CGAGATTTGTTCTACGGCCTTTGGATCCCAGATTTGTTCATGAAGCGTGTGCAAGAGAAT 1594 Query 110904 GGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGA-TGTATATGGAAA 110962 || ||||| || | || ||| || | ||||| || |||| ||| | || | Sbjct 1593 GGGGATTGGTCCCTGTTTTGCCCTAATGAGGCCCCTGGCCTTGCTGACTGT-TGGGGTGA 1535 Query 110963 AGAGTTTGA 110971 | ||||||| Sbjct 1534 AAAGTTTGA 1526 >seq29771 Length=7919 Score = 113 bits (124), Expect = 1e-19 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||||||||| ||| | || ||||||||| ||||||| || |||||||||| Sbjct 6832 GACATTTGAATGATGGTGACTTTGTCCTGTTCAATCGGCAACCGAGTCTCCATAAAATGT 6773 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTG 305426 | || |||| |||| | ||||| || | | | || ||||| |||||| | | Sbjct 6772 CCATAATGGGCCATAGAATCAAAATAATGCCATATTCAACGTTTCGCTTAAATTTGTCGG 6713 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | | || || ||||| |||||||||||||||||||||||||||||||| || || | Sbjct 6712 TTACCTCACCCTACAATGCTGATTTTGATGGAGATGAAATGAATATGCATGTGCCCCAGT 6653 Query 305487 CA 305488 || Sbjct 6652 CA 6651 >seq42153 Length=9390 Score = 111 bits (122), Expect = 4e-19 Identities = 214/313 (68%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 || || || || || |||||||| || ||||| || || ||||| || || |||||| Sbjct 4995 GTTGCCTTCGCGTGCGTTGAAGGGATCTTCTTCTCCGGGAGCTTCTGCGCCATTTTTTGG 4936 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 || |||||||| || | |||||||| || | || || ||| |||| |||||||||||| Sbjct 4935 CTGAAGAAGCGCGGTCTCATGCCTGGGCTGACGTTTTCGAATGAATTGATCTCGAGAGAT 4876 Query 131984 GAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGA- 132042 |||| ||||| || || ||| || | || || ||| ||| || ||| Sbjct 4875 GAAGGCTTGCACTGCGATTTCGCTTGCTTGCTGTACAG-TCTGTTGAAGATGAAGCTGAG 4817 Query 132043 TGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTAC 132102 ||| | || | ||| | | || || || || ||||||| |||||| | Sbjct 4816 TGAGGAGAAAGTGAAAGGGATAGTGGCGGATGCTGTGGAGATCGAGAGGGAGTTCGTGTG 4757 Query 132103 AGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTGA 132162 || ||| |||||||| |||| | |||||||||| || | |||| |||||||||| Sbjct 4756 CGATGCTCTGCCTTGCGCTTTGGTGGGGATGAATGGGGATTTAATGAGTCAGTACATTGA 4697 Query 132163 ATTCGTTGCTGAT 132175 ||| || || ||| Sbjct 4696 ATTTGTAGCGGAT 4684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1183910332099836