Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq452 590 2e-164 seq165807 571 2e-158 seq3541 246 9e-61 seq112378 131 5e-26 >seq452 Length=65819 Score = 590 bits (654), Expect = 2e-164 Identities = 717/967 (74%), Gaps = 10/967 (1%) Strand=Plus/Minus Query 19526 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 19585 ||| | ||||||||||| |||| |||||||| ||||||| || | || ||| Sbjct 10736 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGAC 10678 Query 19586 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCAT 19644 || | |||| || |||||||| |||||||| ||||| ||||| || |||||||| || Sbjct 10677 CGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 10618 Query 19645 CCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGT 19704 || ||||| || || || || ||||| |||||||| || || || || ||| | | Sbjct 10617 TCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCAGGTGCCATTAT 10558 Query 19705 TCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTT 19762 ||| | | ||| || ||||| | ||||| |||||||| |||||||| || || Sbjct 10557 TCCTACTTCTGCA--GCTATCGGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTT 10500 Query 19763 GATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGC 19822 ||||||||| | |||||||| || || | |||| | || | |||||| | |||| Sbjct 10499 GATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGT 10440 Query 19823 ATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGG 19882 | | ||||||||| || |||||||| ||||| | || | || ||| | |||||| Sbjct 10439 GTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTTTGGGTATGCGCCCTTGG 10380 Query 19883 ATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCC 19941 ||| |||||| || || ||||| |||||||| || | || || ||||| | ||||||| Sbjct 10379 ATTGCTGTTGCGTATTCAGCTCCTGTTGCAGCTGCTACCGCTGT-TTTCTTGATCTACCC 10321 Query 19942 GTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTA 20001 ||||||| || || || || |||| ||||||| | || || || ||||| ||||||| Sbjct 10320 AATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTT 10261 Query 20002 CATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGT 20061 |||| | |||||||| || || || ||||| || |||||||| || || ||| | ||||| Sbjct 10260 CATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGT 10201 Query 20062 GGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTC 20121 |||||||||||||| || || ||||||||||| ||||| ||||| |||| || | || Sbjct 10200 AGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTAACTTCTA 10142 Query 20122 GCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAG 20180 | ||| | | || || || ||| | ||| | || | ||||||| || || |||| Sbjct 10141 GTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAG 10082 Query 20181 AAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAAT 20240 | ||||| || ||||| |||||||| ||||||||||||||||| || ||||||||||||| Sbjct 10081 AGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTACTTTGGCCGATTGATCTTCCAAT 10022 Query 20241 ACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAG 20300 | ||| ||||||||| ||||| ||||||||||| | ||||| ||||| || |||| Sbjct 10021 ATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAG 9962 Query 20301 GGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACT 20360 | || |||||| |||| || || | || ||||| || || || || |||||||| | Sbjct 9961 GTATCTGGTTCACTGCTTTAGGTATCAGCACCATGGCTTTCAACCTAAATGGTTTCAATT 9902 Query 20361 TTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCA 20420 | ||||| || | | || | | || ||||| ||| ||||||||||||| || ||| Sbjct 9901 TCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATCA 9842 Query 20421 ATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTG 20480 | |||||||| || || | || || ||||||||||| ||||||||||||||||| || | Sbjct 9841 ACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAG 9782 Query 20481 ACCTTGC 20487 |||| || Sbjct 9781 ACCTAGC 9775 >seq165807 Length=4432 Score = 571 bits (632), Expect = 2e-158 Identities = 709/961 (74%), Gaps = 10/961 (1%) Strand=Plus/Plus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 |||||||||||| |||| |||||||| |||||||||| | | | | || || Sbjct 2983 AACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACT 3042 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || ||||| || |||||||| || || ||||| ||||||||||| || || || Sbjct 3043 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGA 3101 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || || |||||||||||||| ||||| || || ||| | |||| | Sbjct 3102 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTAC 3161 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | || || || || | ||||| |||||||| |||||||| || |||||||| Sbjct 3162 TTCTGCG--GCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAA 3219 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||| | |||||||| || || | | || | || | |||||| | |||| | | Sbjct 3220 TGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 3279 Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGT 19888 ||||||||| || |||||||||||||| | || || || ||| | ||||||||| | Sbjct 3280 TGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 3339 Query 19889 GTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGG 19947 ||||| || || ||||| ||||| || || |||| || ||||| | | || || | || Sbjct 3340 GTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGT-TTTCTTGATTTATCCAATCGG 3398 Query 19948 TCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTT 20007 ||| || || || || |||| |||||| | || ||||| ||||| || |||| ||| | Sbjct 3399 TCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGAT 3458 Query 20008 GGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGG 20067 |||||||| || || || ||||| || |||||||| || |||||| | || || ||||| Sbjct 3459 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGG 3518 Query 20068 TGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGT 20127 ||||||||| || || ||||||||||| ||||| ||||| | || || || | | ||| Sbjct 3519 TGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTC-TAGTTTGA 3577 Query 20128 GC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAG 20186 | | || || || ||| | ||| | || | ||||||| ||||| ||||| |||| Sbjct 3578 TCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAG 3637 Query 20187 AGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTT 20246 | || ||||| |||||||||||||||||||| ||||| || |||||||||||||| ||| Sbjct 3638 AAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 3697 Query 20247 CTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTT 20306 ||| ||||| |||||| |||| |||||| | ||||| ||||| || ||||| || | Sbjct 3698 GTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCT 3757 Query 20307 GGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACC 20366 ||||| |||| || || || || ||||| || ||||| || |||||||| || |||| Sbjct 3758 GGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAACC 3817 Query 20367 AGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTG 20426 | || | | || | | |||||||| ||| |||| |||||||| ||| | || |||| Sbjct 3818 AATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTG 3877 Query 20427 CTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTG 20486 |||| || || | || || ||||||||||| ||||||||||| ||||| || ||||| | Sbjct 3878 CTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAG 3937 Query 20487 C 20487 | Sbjct 3938 C 3938 >seq3541 Length=30046 Score = 246 bits (272), Expect = 9e-61 Identities = 257/335 (77%), Gaps = 3/335 (1%) Strand=Plus/Plus Query 19988 GGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTC 20047 ||||| ||||||| |||| | |||||||| || || || ||||| || |||||||| || Sbjct 15372 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 15431 Query 20048 CACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCG 20107 || ||| | ||||| |||||||||||||| || || ||||||||||| ||||| ||||| Sbjct 15432 CATATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC- 15490 Query 20108 CTTGTTACGTCCTCGCTTGTGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTAC 20167 |||| || | || | ||| | | | | ||| | ||| | || | |||||| Sbjct 15491 CTTGGTAACTTCTAGTTTGATCAGGGGGAAA--GAAAATGAATCTGCTAATGAAGGTTAC 15548 Query 20168 AAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGT 20227 | || || ||||| ||| | || ||||| |||||||| ||||||||||||||||| || Sbjct 15549 AGATTCGGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATGGTTACTTTGGCCGA 15608 Query 20228 TTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCC 20287 |||||||||||||| ||| ||||||||| ||||| ||||||||||||| ||||| Sbjct 15609 TTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCT 15668 Query 20288 TGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGG 20322 ||||| || ||||| || |||||| |||| || || Sbjct 15669 TGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGG 15703 >seq112378 Length=4714 Score = 131 bits (144), Expect = 5e-26 Identities = 140/181 (77%), Gaps = 8/181 (4%) Strand=Plus/Plus Query 19935 TCTACCCGTTTGGTCAGGGTAGCTTCTCC-GATGCTATGCCTTTGGGTATCTCGGGTACG 19993 ||||||| ||||||| || || || ||| |||| ||||||| | || || || ||||| Sbjct 2501 TCTACCCAATTGGTCAAGGAAGTTTTTCCTGATGGTATGCCTCTAGGAATTTCTGGTACT 2560 Query 19994 TTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATG 20053 ||||||| |||| | |||||||||| | | ||| || |||||||| || || ||| Sbjct 2561 TTCAACTTCATGATTATATTCCAAGC-----ACAGCATCCT-ATGCACCCATTTCATATG 2614 Query 20054 CTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTT 20113 | ||||| |||||||||||| |||| || |||||||||| ||||| ||||| |||| | Sbjct 2615 TTGGGTGTAGCTGGTGTATTCAGTGGCTCCCTATTCAGTGTTATGCATGGTTC-CTTGGT 2673 Query 20114 A 20114 | Sbjct 2674 A 2674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148491456828408