Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq156471 104 2e-17 seq169900 100 3e-16 seq63669 95.1 1e-14 seq53616 93.3 4e-14 seq21302 89.7 5e-13 seq185014 87.8 2e-12 seq38015 84.2 2e-11 seq1864 84.2 2e-11 seq38014 82.4 7e-11 >seq156471 Length=3476 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || || || || | ||||| | || || || | | Sbjct 1900 ATGCAGATTTTTGTGAAGACCTTGACGGGGAAGACCATCACTTTGGAGGTTGAGAGCTCC 1959 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||| | || || |||||| || || || ||||| || || |||||| Sbjct 1960 GACACAGTCGACAATGTGAAGGCAAAAATCCAAGACAAGGAAGGTATCCCTCCGGATCAG 2019 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | |||| | |||||||||||||| |||| |||| | |||||||| Sbjct 2020 CAAAGATTGATTTTTGCAGGCAAACAACTCGAGGATGGCAGAACACTGGCGGATTACAAC 2079 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||||||||| ||| ||||| | ||| | |||||||||| || Sbjct 2080 ATACAAAAAGAATCGACCCTTCATCTTGTGCTGCGATTGAGAGGTGG 2126 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || |||| ||||| ||||||| | ||||||||| | Sbjct 1672 ATGCAGATTTTCGTTAAGACCCTAACTGGAAAGACGATCACCTTGGAAGTCGAAAGCTCA 1731 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || || || || || || || || || || ||| Sbjct 1732 GACACCATAGACAACGTGAAGGCCAAGATACAGGACAAGGAAGGGATCCCTCCAGACCAG 1791 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | |||| | || || ||||||||||||| ||||| | ||||||||| Sbjct 1792 CAAAGATTGATTTTTGCTGGAAAGCAACTCGAAGATGGTAGAACACTTGCAGATTACAAT 1851 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || ||||| |||||| | ||| | ||| | | ||||| || || Sbjct 1852 ATCCAGAAAGAGTCCACCCTCCATCTTGTGCTGCGCTTGAGGGGTGG 1898 >seq169900 Length=516 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| ||||||||||| | ||||| ||||||||||| | | Sbjct 431 ATGCAAATCTTCGTTAAAACCCTAACCGGAAAAACCATCACCCTCGAAGTCGAAAGCTCC 372 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || || |||||| || ||||| || || || || || || Sbjct 371 GATACTATTGATAACGTGAAGGCCAAAATTCAAGACAAAGAAGGCATCCCCCCTGACCAA 312 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || || | || ||| || || || ||||||| | | | | || ||||| Sbjct 311 CAACGTCTGATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTTGCTGACTACAAC 252 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||||||||| || || |||| || ||| Sbjct 251 ATTCAAAAAGAGTCAACTCTTCACTTGGTG 222 >seq63669 Length=360 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| |||| |||||| | ||||| ||||||| ||| Sbjct 104 ATGCAGATCTTCGTGAAAACCCTAACTGGAAAAACCATCACCCTCGAAGTTGAAAGTTCG 163 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | ||||| ||||||| ||||| || || || || || |||||| Sbjct 164 GATACTATTGACAATGTAAAGGCAAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAG 223 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | | ||| || || || ||||| | | | | | || ||||| Sbjct 224 CAACGTCTCATCTTTGCCGGAAAGCAGCTTGAAGACGGCCGTACTCTTGCTGACTACAAC 283 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||||||||| || ||| |||| || ||| Sbjct 284 ATTCAAAAAGAGTCAACCCTTCACTTGGTG 313 >seq53616 Length=2978 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| |||| || || ||||||| | |||||||| | | Sbjct 1525 ATGCAAATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTGGAAGTCGAGAGCTCC 1584 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || ||| ||||| || || || || ||||||||| Sbjct 1585 GACACGATCGACAACGTGAAGGCGAAGATTCAGGATAAGGAAGGAATCCCTCCCGATCAG 1644 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||||| |||| || ||||| || || ||||||| || | | | || ||||| Sbjct 1645 CAGAGACTGATTTTCGCAGGCAAGCAGCTGGAAGATGGAAGGACTTTGGCGGACTACAAC 1704 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| || || || | ||||| || Sbjct 1705 ATTCAAAAGGAGTCGACATTGCATTTGGT 1733 >seq21302 Length=5313 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||| || ||||| || ||||| | ||||| | || ||||| ||| | Sbjct 3768 ATGCAGATTTTTGTGAAGACATTGACAGGAAAGACCATCACTTTGGAGGTCGAGAGCTCA 3827 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| ||||| | || || ||| ||| || || || || || || || ||||| Sbjct 3828 -GATACAATCGATAATGTTAAGGCAAAGATTCAAGACAAGGAAGGGATCCCTCCAGATCA 3886 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||| | || | | || || || || ||||||| || | || |||||||| Sbjct 3887 GCAGAGATTGATCTTTGCAGGGAAGCAGCTTGAAGATGGCAGGACGCTCGCTGATTACAA 3946 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| |||||||| |||||| | ||| | ||| | | ||||| || || Sbjct 3947 TATACAAAAAGAGTCCACCCTCCATCTTGTGCTGCGCTTGAGGGGTGG 3994 >seq185014 Length=332 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||||||||| ||||||| ||| | ||||| | ||||||||| | Sbjct 173 CATGCAGATCTTTGTAAAAACCCTAACCGGGAAAACCATCACCCTAGAAGTCGAAAGCTC 232 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| |||||||| | || || |||||| || ||||| || || || || || || Sbjct 233 CGACACTATCGATAATGTGAAGGCCAAAATTCAAGACAAAGAAGGCATCCCCCCTGACCA 292 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 25331 ||| | ||||| | | ||| || || |||||||||| Sbjct 293 GCAGCGGCTCATCTTTGCCGGAAAGCAGCTCGAAGATG 330 >seq38015 Length=2403 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| |||| || || ||||||| | |||||||| | | Sbjct 2399 ATGCAAATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTGGAAGTCGAGAGCTCC 2340 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || ||| |||||||| || || || ||||||||| Sbjct 2339 GACACAATCGACAATGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCCGATCAG 2280 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || |||| | |||||||| || ||||||| || | | || ||||| Sbjct 2279 CAGAGGCTGATTTTTGCAGGCAAACAGCTGGAAGATGGAAGGACATTGGCGGACTACAAC 2220 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| || || || || | ||||| || Sbjct 2219 ATTCAGAAGGAGTCGACATTGCATTTGGT 2191 >seq1864 Length=9564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||| || || || || ||||| | ||||| | || || || || | Sbjct 3604 ATGCAGATATTTGTGAAGACCTTGACTGGAAAGACCATCACTTTGGAGGTTGAGAGTTCA 3545 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || || ||| ||| || || || ||||| || || ||||| Sbjct 3544 -GACACCATCGATAATGTGAAGGCAAAGATTCAAGACAAGGAAGGTATCCCTCCGGATCA 3486 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||| | || | | |||||||| || || |||| |||| | || ||||| Sbjct 3485 GCAAAGATTGATCTTTGCAGGCAAACAGCTTGAGGATGGCAGAACACTGGCGGACTACAA 3426 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||| || || ||| | ||| | ||| | |||||||||| || Sbjct 3425 TATTCAAAAGGAGTCGACCCTCCATCTCGTGCTGCGATTGAGAGGTGG 3378 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGC-CA 25232 ||||| | ||||| || || || || ||||| | ||||| | || || || || || Sbjct 3832 ATGCAGATTTTTGTGAAGACCTTGACAGGAAAGACCATCACTTTGGAGGTTGAGAGTTCA 3773 Query 25233 ACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | | || ||||| | || || ||| ||| || || || ||||| || || |||| Sbjct 3772 A--ACACCATCGATAATGTGAAGGCAAAGATTCAAGACAAGGAAGGTATCCCTCCGGATC 3715 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||| ||| | || | | ||||| || || ||||||| || | | ||||||| Sbjct 3714 AGCAGAGATTGATCTTTGCAGGCAAGCAGCTTGAAGATGGCAGGACACTGGCTGATTACA 3655 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||| ||||||||||| ||| ||||| | ||| | | |||||||| || Sbjct 3654 ATATCCAAAAAGAATCTACCCTTCATCTCGTGCTGCGCTTGAGAGGTGG 3606 >seq38014 Length=3548 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| |||| || || ||||||| | |||||||| | | Sbjct 1209 ATGCAAATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTGGAAGTCGAGAGCTCC 1150 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || || ||||| || || || || ||||||||| Sbjct 1149 GACACGATCGACAACGTGAAGGCGAAGATCCAGGATAAGGAAGGAATCCCTCCCGATCAG 1090 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || |||| | ||||| || || ||||||| || | | | || ||||| Sbjct 1089 CAGAGGCTGATTTTTGCAGGCAAGCAGCTGGAAGATGGAAGGACTTTGGCGGACTACAAC 1030 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 |||||||| || || || | ||||| ||| Sbjct 1029 ATTCAAAAGGAGTCGACATTGCATTTGGTG 1000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444032427016320