Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq156471 98.7 8e-16 seq21302 84.2 2e-11 seq119584 82.4 6e-11 >seq156471 Length=3476 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || || ||||| || |||||||| || |||| || | | Sbjct 1900 ATGCAGATTTTTGTGAAGACCTTGACGGGGAAGACCATCACTTTGGAGGTTGAGAGCTCC 1959 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | || | | | ||||| |||||| ||||| ||||| | || ||||| Sbjct 1960 GACACAGTCGACAATGTGAAGGCAAAAATCCAAGACAAGGAAGGTATCCCTCCGGATCAG 2019 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| ||| ||||||||| | || ||| | ||| ||| ||||||||| Sbjct 2020 CAAAGATTGATTTTTGCAGGCAAACAACTCGAGGATGGCAGAACACTGGCGGATTACAAC 2079 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 |||||||||||||| || || ||| | || || | || |||| || Sbjct 2080 ATACAAAAAGAATCGACCCTTCATCTTGTGCTGCGATTGAGAGGTGG 2126 >seq21302 Length=5313 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || || |||||||| |||||||| || |||| || | | Sbjct 3996 ATGCAGATTTTTGTGAAGACCTTGACTGGAAAGACCATCACTTTGGAGGTTGAGAGCTCC 4055 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | || | | | || || ||||| ||||| ||||| | || ||||| Sbjct 4056 GACACAGTCGACAATGTTAAGGCGAAAATACAAGACAAGGAAGGGATCCCTCCGGATCAG 4115 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||| | || | ||| |||||||| | |||||| | ||| ||| ||||||||| Sbjct 4116 CAGAGGTTGATCTTTGCAGGCAAACAGCTTGAAGATGGCAGAACGCTGGCGGATTACAAC 4175 Query 106440 ATACAAAAAGAATCTACACTACAT 106463 |||||||| ||||| || || ||| Sbjct 4176 ATACAAAAGGAATCGACCCTTCAT 4199 >seq119584 Length=3068 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 || |||||||| | || ||| || || ||||| || | ||| || |||||||| ||| Sbjct 2250 GATAAAGAAGGAATCCCTCCTGACCAGCAGAGGCTGATATTTGCTGGTAAACAATTGGAA 2309 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | |||| ||| |||||||| || ||||||||||| || || || | || ||| Sbjct 2310 GATGGCAGAACTTTGGCGGATTACAATATCCAAAAAGAATCAACTCTTCACCTTGTTTTG 2369 Query 106473 AGGTTACGAGGAGGA 106487 ||| | | |||||| Sbjct 2370 AGGCTCAGGGGAGGA 2384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401393660148608