Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq42153 237 2e-56 seq2278 120 4e-21 >seq42153 Length=9390 Score = 237 bits (262), Expect = 2e-56 Identities = 401/559 (72%), Gaps = 24/559 (4%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCC-GCTACCAGCGGATATGGGAAATG-TACCAAAAAGGCCGAGGCCTCCT 1455810 ||||||| || | |||||| | ||||||| ||| ||| | ||||| ||||| |||| Sbjct 5432 TGTTCCCGATTCAGCTACCCTCAAGTATGGGAGATGGTACACAGAAGGCGGAGGC-TCCT 5374 Query 1455811 TT-TGGACCGCCGAGGAGGTCGACCTCGGCGCC--GACACGGTCCAC-TGGGTGTCGCTG 1455866 | ||||| || |||||||||||| | | ||| ||| | |||| |||| ||| || Sbjct 5373 TCCTGGACGGCGGAGGAGGTCGACTTGGTCGCGAGGACCAGCGCCACATGGGAGTCCCTC 5314 Query 1455867 AGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGG 1455926 | | ||||||| |||||| | | |||||| |||||||| ||||||||| ||| || Sbjct 5313 ACCCGCGACGAGAAGCATTTCCTTA-GCACGTGCTCGCCTTGCTTCGCCGCCT-CGACGG 5256 Query 1455927 CATCGTGGCCGAGAA--CCTG-GCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGC 1455983 |||||| ||||| | | |||||||| || |||| ||||| | | ||||| Sbjct 5255 CATCGTCCTGGAGAATACATCAGCCGGCCGTTTCATGAG-GAGGTGGCAGGTCTCGAGGC 5197 Query 1455984 A-CGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGC 1456042 || || ||||||||||||||||||||||| ||||||||||| || | ||| | Sbjct 5196 GGCGCGCCTTCTACGGGTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCC 5137 Query 1456043 TCCTGATCGACACCTACGTC-AAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATC 1456101 |||| |||| |||||| || ||| ||| |||||| || |||||| ||||| ||| Sbjct 5136 TCCTCCTCGAGACCTACATCCAAGTGATCGGAGGAGAAGAGCCGCCTCTTCCGCGCGATC 5077 Query 1456102 GACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG 1456161 ||||| | || | || || ||||| ||||||| ||| |||||| || ||| Sbjct 5076 GACACCATCCCTTGCGTCGAGAGGAAGGCGAGCTGGGCGCTGAGCTGGATCGAC--GGAT 5019 Query 1456162 GGCCTCGACACTTT-GCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTC 1456219 | || || || || ||| || | || | ||| || |||| || || ||||| ||| Sbjct 5018 CG----GAGACGTTCGCGGAGAGGTTGGTTGCCTTCGCGTGCGTTGAAGGGATCTTCTTC 4963 Query 1456220 TCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTG 1456279 || || || ||||||||||| |||||||| ||||||||||| |||||||| || || | Sbjct 4962 TCCGGGAGCTTCTGCGCCATTTTTTGGCTGAAGAAGCGCGGTCTCATGCCTGGGCTGACG 4903 Query 1456280 CTTTAGCAACGAATTTATC 1456298 ||| | || ||||| ||| Sbjct 4902 TTTTCG-AATGAATTGATC 4885 >seq2278 Length=4600 Score = 120 bits (132), Expect = 4e-21 Identities = 168/229 (73%), Gaps = 10/229 (4%) Strand=Plus/Minus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||||| |||||||||||||| || | | ||| ||| |||| |||| | ||| Sbjct 1412 CAAGGTGCTGAAGCAGGTGCACCCG-GA--CATCGGG--ATC-TCCAGCAAGGCGATGGG 1359 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 |||||||||| || |||||||||| |||| ||| || ||| | ||||| Sbjct 1358 GATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCATGGAGTCGTCGCGCCT 1299 Query 725036 GGCGCGCTCCAACAAGCGCAAC--ACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| ||||||| ||| || ||| | | |||||||||||||||||||| | Sbjct 1298 CGCGCGCTACAACAAGA--AACCTACCATCACCTCACGCGAGATCCAGACCGCCGTCAGG 1241 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | | ||||| || |||| ||||||||||||||||| |||| Sbjct 1240 CTCGTCCTCCCTGGCGAGCTCGCCAAACACGCCGTCTCCGAGGGGACCA 1192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7159400858969912