Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq87019 192 8e-44 seq33760 93.3 6e-14 >seq87019 Length=1933 Score = 192 bits (212), Expect = 8e-44 Identities = 395/584 (68%), Gaps = 24/584 (4%) Strand=Plus/Plus Query 69322 ATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTT 69381 || |||||||| ||||||||| | | |||||||| || || |||||||||||||||||| Sbjct 1331 ATGATCTCTGTGCATAGATTAGAAGACTTGATAGTTCCAAGGTTTTGCTGATTACTCTTT 1390 Query 69382 TTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATA 69441 ||||||||| |||||||| || || | ||| | || ||||||||||| | ||| | | Sbjct 1391 CTGTTACAGGAATCCTTGTAGAGCATGTAGGGATTGCCTGTTTCAATCTGGGCTTCCAAA 1450 Query 69442 ATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTC--TTTT---- 69495 |||| ||||| || ||| | | | | | | ||| || || |||| Sbjct 1451 ATAG-----CAAACCAC---AGCTTCTGT---GCTTTAACAACACTCCTAGATTTTCCCT 1499 Query 69496 -----TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAG 69550 ||||| ||| || | | || || | || |||||| ||| | | |||| Sbjct 1500 CAGACTCATAGCCTGTGTACAACTTCTCAAACTTTTCACCCCAACAGTCAGCAAGGCCAG 1559 Query 69551 GACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATA 69610 | ||||| || || | || ||||| | ||| || | || || ||||| || | Sbjct 1560 GGGCCTCATTAGGGCAAAACAGGGACCAATCCCCATTCTCTTGCACACGCTTCATGAACA 1619 Query 69611 GATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTA 69669 ||| || |||||||| || || || | ||||| | ||| || ||||| ||||| | Sbjct 1620 AATCTGGGATCCAAAG-GCCGTAGAACAAATCTCGAGCTCTGTTCTCTTCCTTTCCATGA 1678 Query 69670 ttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 69729 || || | | || || | || | ||||| | ||||||||| || | ||| || || Sbjct 1679 TTCTTCCTCAAGTCTAGCCAATCAAATATATCTGCATGCCATGGCTCCAAATAAATAGCA 1738 Query 69730 ATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACT 69789 | | ||| || ||| ||| |||||||||| ||||| || |||| ||| | || Sbjct 1739 AAAGCACCCTTTCTTTTGCCTCCACCCTGATCTACGTATCGAGCTGTGTCATTGAACACC 1798 Query 69790 CTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTT 69849 ||||||||||||| || ||||| ||| ||||||| ||||| ||| || || || || Sbjct 1799 CTCAGCATCGGAACTATGCCATTGGATGTACCATTAGTTCCCCTAATGTAGCTGCCCATT 1858 Query 69850 GCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTT 69893 || || ||||| |||||| | || || || || || |||| Sbjct 1859 GCTCGTATATTGTGAATAGACAATCCAATACCACCCGCAGTTTT 1902 >seq33760 Length=8815 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || |||||||| | |||| || |||| ||| | |||| ||||| || | ||| ||| Sbjct 3356 CCACCCTGATCCACATATCGAGCTGTGTCATTGAAAACTCGAAGCATTGGGACAATGCCA 3297 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | ||||| |||||| |||||||||||| | || || ||||| || || Sbjct 3296 TTGGATGTCCCATTCGTTCCACGTATATAACTTCCTGTGGCACGTATATTGTGGATCGAC 3237 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || ||||| || ||| || | |||||| || | ||| |||||||| Sbjct 3236 ACACCAATACCTCCAGCTGATTTGCTAATAACAGCACATTCCTTAAGTGTATCATATATG 3177 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 || || || || ||||| ||||| Sbjct 3176 CCTTCAATACTGTCATCCTTCATG 3153 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | ||| ||||| || || ||||||||| | || | |||| Sbjct 2994 AGTTCCAGCATTAAAAAGTGTTGGAGAGGCATGGGTGAACCATCGCTGGGACAATAGATG 2935 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||||||| | | |||| || || || || ||| || || | || || |||||||| Sbjct 2934 ATATGTTTTGAGAACTGAATCAATGTCATCCTTATGGATGCCAACAGCAACTCGCATCAA 2875 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | ||| || || | | || |||||||| || |||| || Sbjct 2874 CATGTGTTGTGGCCTTTCAACAACCTTGCCTTGGACCTTTAACAGGTAAGACCTTTCAAG 2815 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||||| ||||| || | || ||||||||| || || || || Sbjct 2814 CGTTTTAAAGCCAAAGTAATCATAGTCAAAGTCTCTGTCATATATGAT 2767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685269869948640