Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq21692 127 3e-24 seq42153 102 1e-16 seq87019 96.9 4e-15 seq26386 95.1 2e-14 seq130355 87.8 2e-12 seq115059 84.2 3e-11 seq136600 82.4 1e-10 >seq21692 Length=6131 Score = 127 bits (140), Expect = 3e-24 Identities = 228/333 (68%), Gaps = 0/333 (0%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| ||||| | |||||||| || ||||| || | | ||||| | | ||||| Sbjct 2900 ATCAAGAATATCTGCACGATTAGTTGCTGCAATTACAATCACACCAGTGTTACCTTCAAA 2959 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 ||||||||| || || | | || || | ||| ||||||||||| ||||| || Sbjct 2960 GCCATCCATTTCTGTCAAGAGCTGGTTGAGTGTCTGTTCTCTCTCGTCATTCCCTCCACC 3019 Query 11602 ACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGG 11661 | ||||| | | ||| || || |||||||| ||||||| || ||||||||||| Sbjct 3020 AATACCAGTTCCTCTTTGACGCCCAACAGCATCAATTTCATCAACAAACACAATACATGG 3079 Query 11662 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAA 11721 ||||| || | | || || ||||| |||||| || || ||||||||||| Sbjct 3080 GGCGTTTTCCTTTGCTTTCTTGAAAAGGTCGCGGACCCTTGAAGCTCCAACACCAACAAA 3139 Query 11722 CATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGAT 11781 |||||| ||||| | | | || | || ||| || ||| || |||||| || || Sbjct 3140 CATCTCAACAAACTCAGAACCTGAAATCGAGAAGAAAGGTACACCTGCTTCACCAGCAAT 3199 Query 11782 GGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || ||| || | |||||| || ||||| || Sbjct 3200 AGCCTTGGCTAGCAAGGTCTTCCCTGTACCCGG 3232 >seq42153 Length=9390 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || ||||||| || || | |||||| || || || || ||||||||||| |||||| Sbjct 4871 CCTTCATCTCTCGAGATCAATTCATTCGAAAACGTCAGCCCAGGCATGAGACCGCGCTTC 4930 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 |||| |||| |||| |||||||| ||||||||||||||| || || || ||||| || Sbjct 4931 TTCAGCCAAAAAATGGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCAACGCACGCGAAG 4990 Query 122797 GCAA 122800 |||| Sbjct 4991 GCAA 4994 >seq87019 Length=1933 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 110629 CCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACC 110688 ||| ||||| |||| |||||||||| | ||||||||||| || | | ||| ||||| Sbjct 619 CCACAGACCCATCTCTGTGAGGTCATTCAAAAGGTGCTTGTTCACCACAATAAATTCACC 678 Query 110689 TGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACC 110748 || ||| | ||| || |||| ||| |||||||||||||| ||||| || || Sbjct 679 ACTTAGAACTCTGCGGCTGTATATATTTGATGTATATGGTTCAAAGCACTCATTGTTTCC 738 Query 110749 CAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGA 110794 | ||| || ||||| || |||||||| || || ||||||||| Sbjct 739 GAGGATCTGACTAGTGGATGCAGTTGGCATGGGGGCTATCAAAAGA 784 >seq26386 Length=13841 Score = 95.1 bits (104), Expect = 2e-14 Identities = 252/380 (66%), Gaps = 9/380 (2%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | |||||||| || || |||||||||||||| | | Sbjct 1716 AATCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTCCCA--C 1773 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | ||| ||||| | | ||| | ||||| |||||||||||||||||||| ||||| | Sbjct 1774 CTCCCATCCCAGCCCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAACACAATGC 1833 Query 11658 ATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 | ||| |||||| || | || || | ||| | || || || ||||| || Sbjct 1834 AAGGT--GCTTTCGCCTTCGCCTTCTCGAACAAATCCCTCACTCTCGAAGCTCCCACTCC 1891 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 || |||| |||||| || | | || | || || ||| || || | ||| || Sbjct 1892 CACGAACAGCTCCACGAACTCCGAAGCTGCACATGAGAAGAACGGCACCCCGGCTTCTCC 1951 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 || | || | || | |||||||| ||||| || || |||| | | |||| || Sbjct 1952 GGCCACCGCCCTAGCCAATAGGGTCTTCCCCGTGCCAGGTGGACCCACCAAAAGGCAACC 2011 Query 11836 TCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAAT 11895 | |||||||| ||||| | || ||| | || || | || | |||||||| | Sbjct 2012 TTTAGGGATCTTTGCACCCAATGCAGTGTATTTATCTGGGTTTTTCAAGAAATCCACCAC 2071 Query 11896 CTCTT-CAAGTTCATCTTTG 11914 |||| ||| | || ||||| Sbjct 2072 TTCTTGCAACTCCAGCTTTG 2091 >seq130355 Length=1992 Score = 87.8 bits (96), Expect = 2e-12 Identities = 199/294 (68%), Gaps = 29/294 (10%) Strand=Plus/Plus Query 11537 TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT 11596 ||||| ||||| | ||| || | | |||||||| || ||||| | ||||||||| ||| Sbjct 858 TCAAAACCATCAAGCTCTGTTAAAAGTTGATTAAGAGTCTGTTCACGCTCATCATT-GCT 916 Query 11597 GGCA-TACCA------CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAA 11649 | || | | | ||| ||| | || || | ||||||||||||||||||||||| Sbjct 917 GACACTGCGAAGCCGTCCATCACGACCTT---TGGCAACCGCATCAATCTCATCAATGAA 973 Query 11650 GACAATACATGGT-----TGATTTT-CGCGGGCGATTTCAAAGAGATCGCGAACCCTTTT 11703 ||||||| | ||| | |||| | |||| ||| ||||| | |||||| Sbjct 974 GACAATAGAAGGTGCCTCTCTTTTTGCACGGG------TAAAAAGATCTCTAACCCTGGC 1027 Query 11704 GGCACCCACACCAACAAACATCTCCACAAAGT---TTGCGGCAGAGCACTGGATGAATGG 11760 || |||| ||| ||| | | ||| ||||| | |||| | | ||| ||||| || Sbjct 1028 TGCTCCCATACCGACATAAAGCTCAACAAATTCACTTGCTGAACAGC---TTATGAAAGG 1084 Query 11761 GACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 |||| || || || || | ||| || || || |||||||| ||||| || Sbjct 1085 CACATCTGCCTCTCCTGCCACAGCTTTTGCAAGAAGTGTCTTTCCTGTACCAGG 1138 >seq115059 Length=565 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 110646 TGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCA 110705 |||| || || | |||||||||||||||| ||||||||||| | |||||| Sbjct 226 TGAGATCGTTAAGAAGGTGCTTGTTGACAACTACAAACTCACCACTTAAAACTCTTCTGC 167 Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 || ||||||| |||||| ||||||||||| ||||| || || | || || || | Sbjct 166 TATAAATGTTTGATGTGTACGGTTCAAAGCACTCATTGTTGCCAAGAATCTGGCTTGTTG 107 Query 110766 AGGCTGTTGGCATTGGTGC 110784 | || ||||||||||| || Sbjct 106 AAGCAGTTGGCATTGGAGC 88 >seq136600 Length=929 Score = 82.4 bits (90), Expect = 1e-10 Identities = 203/308 (66%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 111860 ATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCG 111919 |||| ||||| ||| | ||||| | |||||||| | || ||||| || | Sbjct 872 ATTTCTGCACATTCCTTTAGAGTGTCGTAGATACCCTCAATGCTATCCTCTTTCATACAC 813 Query 111920 ATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTT 111979 | |||||||||||| || ||| ||||| || ||||||||||| || || || | Sbjct 812 AGGAGGAAGCAACTGCTCAACTGAGGTCTACACGTTCCAGCATTGAAAAGAGTAGGCGAG 753 Query 111980 GCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCT 112039 || ||| ||||| ||||||||||| | | || || | | ||| ||||| | Sbjct 752 GCATGAGTGAACCAGCCTTGGGACATTGTATGATAGGTACGGATGGCAGCGTCAATATTG 693 Query 112040 TCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATG 112099 || || || || | | |||| ||| ||||||| ||| || |||||| | | Sbjct 692 TCTTTATGAATACCAACAGAAACCCTCATTAACATGTGCTGAGGCCTTTCCACTACCTTC 633 Query 112100 CCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCA 112159 |||| || || | ||||| | | || ||||| |||| ||||||||| || | | | Sbjct 632 CCATTGATCCTCAGTAGATAAGACCTTTCCAGGGTCTTGAATCCAAAGTAATCATAGTAA 573 Query 112160 TAGTCCCG 112167 |||| || Sbjct 572 AAGTCTCG 565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626533547049600