Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq42153 104 3e-17 seq26386 96.9 4e-15 >seq42153 Length=9390 Score = 104 bits (114), Expect = 3e-17 Identities = 145/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 130046 GAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAA 130105 ||||| | ||||||||| || ||| || ||||||||||| |||||||||| ||| ||| Sbjct 4883 GAGATCAATTCATTCGAAAACGTCAGCCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAA 4942 Query 130106 ATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGC 130165 || || || || || |||||||||||||| || || |||||||| |||| | | | Sbjct 4943 ATGGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCAACGCACGCGAAGGCAACCAACCTC 5002 Query 130166 TCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCG 130225 || || || | || | || | ||| ||| |||||| |||||| ||||| Sbjct 5003 TCCGCGAACGTCTCCGA---TCCGTCGATCCAGCTCAGCGCCCAGCTCGCCTTCCTCTCG 5059 Query 130226 ATACACGGGACGGTCTGGATCGC 130248 | || |||| ||| | |||||| Sbjct 5060 ACGCAAGGGATGGTGTCGATCGC 5082 >seq26386 Length=13841 Score = 96.9 bits (106), Expect = 4e-15 Identities = 286/433 (66%), Gaps = 16/433 (4%) Strand=Plus/Plus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCA--- 14152 ||||| | |||| | ||||||||| || | || | | ||||| |||| | Sbjct 1659 TCAAGAACATCAGGCCTGTTCGTCGCAGCCAACACTATAACGCCCGA---GTTACCGGTG 1715 Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || |||||||| ||||||||||| ||||| || || || || | ||||||||| || | Sbjct 1716 AATCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTCCCA--C 1773 Query 14213 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 | ||| || || | | ||| | || || || ||||| ||||| ||||| || || | Sbjct 1774 CTCCCATCCCAGCCCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAACACAATGC 1833 Query 14271 ATGGTTGATTTTCACGGGCAACT--TCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 | ||| |||| | | || || || | ||| | ||||||| || || || || Sbjct 1834 AAGGT--GCTTTCGCCTTCGCCTTCTCGAACAAATCCCTCACTCTCGAAGCTCCCACTCC 1891 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 ||| |||| |||||| || | | || | |||| || ||| || || | ||| || Sbjct 1892 CACGAACAGCTCCACGAACTCCGAAGCTGCACATGAGAAGAACGGCACCCCGGCTTCTCC 1951 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACC 14448 || | || | || | |||||||||||||| || ||| || | | |||| ||| Sbjct 1952 GGCCACCGCCCTAGCCAATAGGGTCTTCCCCGTGCCAGGTGGACCCACCAAAAGGCAACC 2011 Query 14449 ACGTGGGATCCTGGCA-CCACTGCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGA 14507 |||||| | ||| ||| || || ||| || || | ||| | ||| ||||| | Sbjct 2012 TTTAGGGATCTTTGCACCCAATG-CAGTGTATTTATCTGGGTTTTTCAAGAAATCCACCA 2070 Query 14508 TTTCTTCCAATTC 14520 ||||| ||| || Sbjct 2071 CTTCTTGCAACTC 2083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616959644534560