Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq87019 123 3e-23 seq26386 113 5e-20 seq21692 105 8e-18 seq42153 87.8 2e-12 >seq87019 Length=1933 Score = 123 bits (136), Expect = 3e-23 Identities = 375/567 (66%), Gaps = 17/567 (3%) Strand=Plus/Minus Query 104507 ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCC 104566 ||| |||| || |||||| ||| |||| || |||| ||||| | || || || | | Sbjct 1845 ATTAGGGGAACTAATGGTACATCCAATGGCATAGTTCCGATGCTGAGGGTGTTCAATGAC 1786 Query 104567 ACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTT 104623 ||||| || || ||| |||| | ||| | ||||||| || | || | ||| | Sbjct 1785 ACAGCTCGATACGTAGATCAGGGTGGAGGCAAAAGAAAGGGTGCTTTTGCTATTTATTTG 1726 Query 104624 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAG 104683 ||||||||||| || ||||| | || | || || ||| | || || || | || Sbjct 1725 GAGCCATGGCATGCAGATATATTTGATTGGCTAGACTTGAGGAAGAATCATGGAAAGGAA 1666 Query 104684 GAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAG 104742 || | | | || || ||| | |||| || || ||||| |||||| | ||||||||| | Sbjct 1665 GA-GAACAGAGCTCGAGATTTGTTCTACGGCCTTTGGATCCCAGATTTGTTCATGAAGCG 1607 Query 104743 AGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA 104802 || | |||| ||| ||||||| || ||||| || | |||| ||||| || | || Sbjct 1606 TGTGCAAGAGAATGGGGATTGGTCCCTGTTTTGCCCTAATGAGGCCCCTGGCCTTGCTGA 1547 Query 104803 -TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GA-AGAAGGTCGG 104857 || | |||||| ||||||| | |||||| || ||| || ||| || Sbjct 1546 CTGTTG-GGGTGAAAAGTTTGAGAAGTTGTACACAGGCTATGAGTCTGAGGGAAAATCTA 1488 Query 104858 GCGACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGA 104916 | || || || ||| | || | ||||| |||||| | | | || | || Sbjct 1487 G-GAGTG---TTGTTAAAGC-ACAGAAGCTGTGGTTTGCTATTTTGGAAGCCCAGATTGA 1433 Query 104917 GACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAA 104976 || || | || |||||||| ||||| || |||||||| |||||||||||| | || Sbjct 1432 AACAGGCAATCCCTACATGCTCTACAAGGATTCCTGTAACAGAAAGAGTAATCAGCAAAA 1373 Query 104977 TTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGA 105036 | || |||||| ||| ||||| || ||||| ||| | ||||| ||| ||| Sbjct 1372 CCTTGGAACTATCAAGTCTTCTAATCTATGCACAGAGATCATCGAATTCACAAGTCCAGA 1313 Query 105037 TGAGACGGCTGTGTGTAACCTCGCATC 105063 || || ||||| || || ||||| || Sbjct 1312 GGAAACAGCTGTCTGCAATCTCGCTTC 1286 >seq26386 Length=13841 Score = 113 bits (124), Expect = 5e-20 Identities = 256/380 (67%), Gaps = 9/380 (2%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || ||||| || || |||||||| || || | ||||||||| | | Sbjct 1716 AATCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTCCCA--C 1773 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | ||| ||||| | | ||| | ||||| |||||||||||||||||||| || |||| Sbjct 1774 CTCCCATCCCAGCCCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAACACAATGC 1833 Query 9732 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 | ||| |||||| || || || || | ||||| || | | || ||||| || Sbjct 1834 AAGGT--GCTTTCGCCTTCGCCTTCTCGAACAAATCCCTCACTCTCGAAGCTCCCACTCC 1891 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 || |||| |||||| || | | || | |||| || ||| || || | ||| || Sbjct 1892 CACGAACAGCTCCACGAACTCCGAAGCTGCACATGAGAAGAACGGCACCCCGGCTTCTCC 1951 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 || | || | || | || ||||| ||||| || || |||| | | ||| ||| Sbjct 1952 GGCCACCGCCCTAGCCAATAGGGTCTTCCCCGTGCCAGGTGGACCCACCAAAAGGCAACC 2011 Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 9969 | || ||||| || || | || |||| | || || | || | |||||||| | Sbjct 2012 TTTAGGGATCTTTGCACCCAATGCAGTGTATTTATCTGGGTTTTTCAAGAAATCCACCAC 2071 Query 9970 TTCTTCCAA-TTCATCTTTG 9988 ||||| ||| | || ||||| Sbjct 2072 TTCTTGCAACTCCAGCTTTG 2091 >seq21692 Length=6131 Score = 105 bits (116), Expect = 8e-18 Identities = 248/367 (68%), Gaps = 8/367 (2%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| | |||||||| | | || |||||| ||||| | ||||| || || || Sbjct 2870 ATCAAACCTTCCTGGACGTAACAAGGCAGAATCAAGAATATCTGCACGATTAGTTGCTGC 2929 Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 || |||| | ||| || | | ||||| |||||||| |||||||| || ||||| | Sbjct 2930 AATTACAATCACACCAGTGTTACCTTCAAAGCCATCCATTTCTGTCAAGAGCTGGTTGAG 2989 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9705 || ||||| | || |||||| || | ||||| | | ||| || || || Sbjct 2990 TGTCTGTTCTCTCTCGTCATTCCCTCCACCAATACCAGTTCCTCTTTGACGCCCAACAGC 3049 Query 9706 ATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA-CTTCAAAGAGAT 9764 |||||| ||||||| || || || ||||| ||||| || ||| ||| || | Sbjct 3050 ATCAATTTCATCAACAAACACAATACATGGGGCGTTTTCCTTTGCTTTCTTGAAA-AGGT 3108 Query 9765 CCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9822 | || || | ||| || || ||||||||||||||||| ||||| | | | ||| | Sbjct 3109 CGCGGACCC--TTGAAGCTCCAACACCAACAAACATCTCAACAAACTCAGAACCTGAA-A 3165 Query 9823 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || ||| || ||| | |||||| ||||| || ||| || | ||||| || | Sbjct 3166 TCGAGAAGAAAGGTACACCTGCTTCACCAGCAATAGCCTTGGCTAGCAAGGTCTTCCCTG 3225 Query 9882 TACCTGG 9888 |||| || Sbjct 3226 TACCCGG 3232 >seq42153 Length=9390 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 || || ||||| ||||| || ||||||||||| || ||||||||| |||| |||||| Sbjct 4992 GCCTTCGCGTGCGTTGAAGGGATCTTCTTCTCCGGGAGCTTCTGCGCCATTTTTTGGCTG 4933 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCT 94901 |||||||| ||||||||||| || || Sbjct 4932 AAGAAGCGCGGTCTCATGCCTGGGCT 4907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581869168894240