Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq185098 86.0 3e-12 seq172882 86.0 3e-12 seq113753 86.0 3e-12 >seq185098 Length=494 Score = 86.0 bits (94), Expect = 3e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 65120 TTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAA-ACT 65178 ||||| ||||| |||| |||||||||||||||||| ||||| | | | || ||| Sbjct 339 TTAATGTTGTTGCTTCCAACAAAATTCTGAGCCATTCCAATAATAG-TACTCACAAGACT 281 Query 65179 CGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTT 65238 |||||||||||||||| | ||||| ||||||||||| ||| || || ||||| || Sbjct 280 TTGTTCACCGTGATGATATGCAGAATGCTCAGAGACATAACCAGAGAACTGGGCAACCTT 221 Query 65239 TATTTCCGT 65247 | || ||| Sbjct 220 TGCTTGCGT 212 >seq172882 Length=733 Score = 86.0 bits (94), Expect = 3e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 65120 TTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAA-ACT 65178 ||||| ||||| |||| |||||||||||||||||| ||||| | | | || ||| Sbjct 578 TTAATGTTGTTGCTTCCAACAAAATTCTGAGCCATTCCAATAATAG-TACTCACAAGACT 520 Query 65179 CGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTT 65238 |||||||||||||||| | ||||| ||||||||||| ||| || || ||||| || Sbjct 519 TTGTTCACCGTGATGATATGCAGAATGCTCAGAGACATAACCAGAGAACTGGGCAACCTT 460 Query 65239 TATTTCCGT 65247 | || ||| Sbjct 459 TGCTTGCGT 451 >seq113753 Length=445 Score = 86.0 bits (94), Expect = 3e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 65120 TTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAA-ACT 65178 ||||| ||||| |||| |||||||||||||||||| ||||| | | | || ||| Sbjct 157 TTAATGTTGTTGCTTCCAACAAAATTCTGAGCCATTCCAATAATAG-TACTCACAAGACT 215 Query 65179 CGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTT 65238 |||||||||||||||| | ||||| ||||||||||| ||| || || ||||| || Sbjct 216 TTGTTCACCGTGATGATATGCAGAATGCTCAGAGACATAACCAGAGAACTGGGCAACCTT 275 Query 65239 TATTTCCGT 65247 | || ||| Sbjct 276 TGCTTGCGT 284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235131737321400