Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq42153 154 2e-32 seq48767 109 6e-19 seq124929 105 7e-18 seq73279 95.1 1e-14 seq156240 86.0 7e-12 seq33854 86.0 7e-12 seq35733 84.2 2e-11 >seq42153 Length=9390 Score = 154 bits (170), Expect = 2e-32 Identities = 481/724 (66%), Gaps = 37/724 (5%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || ||||| |||| ||| || || |||||||||||||| | ||| ||| |||||| Sbjct 4565 TATTCACCAACCCTCTTCTCGAAGAAGTTGGTCTTCCCCTGCAAACTGATCAATTCCATC 4624 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATGAG 74578 || |||||||| |||| || ||| | ||||| | |||||| || |||| Sbjct 4625 CAATCGAAAGGATTCTGCACATTGTAGA---GCTTCCCATATCCCAAA----GCATTGAG 4677 Query 74579 G---CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAG 74635 | |||||| ||||||| ||||||||| ||||| || ||| ||| || | | Sbjct 4678 CAACCTATCCGCTACAAATTCAATGTACTGACTCATTAAATCCCCATTCATCCCCACCAA 4737 Query 74636 TTTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAAT 74695 ||| ||||| || ||| | ||||| ||||| | ||| ||| || | || | Sbjct 4738 AGCGCAAGGCAGAGCATCGCACACGAACTCCCTCTCGATCTCCACAGC--ATCCGCCACT 4795 Query 74696 CT---TGTGAATGTCTTTGGAAGGGCA-CTTTTCCCTCAGGTGAGAGTAAAGCGTCACGG 74751 | | | | | ||| | || ||| | ||| || ||| ||| | Sbjct 4796 ATCCCTTTCACTTTCTCCTCACT--CAGCTTCATCTTCAACAGACTGTACAGCAAGCAAG 4853 Query 74752 CAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAG 74811 | || || ||| ||||||||||||| ||||||||||||||||||| || |||| Sbjct 4854 CGAAATCGCAGTGCAAGCCTTCATCTCTCGAGATCAATTCATTCGAAAACGTCAGCCCAG 4913 Query 74812 GCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGC 74871 |||| || || |||||||||| |||||| ||||| |||||| || ||||||||| | Sbjct 4914 GCATGAGACCGCGCTTCTTCAGCCAAAAAATGGCGCAGAAGCTCCCGGAGAAGAAGATCC 4973 Query 74872 CTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGC--ATCGGAAGTCATCCA 74929 |||| || ||||| ||||| || | | | |||||||| | ||| | | ||||| Sbjct 4974 CTTCAACGCACGCGAAGGCAACCAACCTCTCCGCGAACGTCTCCGATCCGTCG--ATCCA 5031 Query 74930 AGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAG 74989 || | ||||| || || | | ||| ||||| || |||||||| ||||||| Sbjct 5032 GCTCAGCGCCCAGCTCGCCTTCCTCTCGACGCAAGGGATGGTGTCGATCGCGCGGAAGAG 5091 Query 74990 GCTTGCCTTCTCTTCGGGATC-CTT-GACGAGCTTGTCAATCATAAGTGAGTACGTCTCC 75047 || |||||| || |||| ||| || | | || | | || |||| |||| Sbjct 5092 GCGGCTCTTCTCCTC-CGATCACTTGGATGTAGGTCTCGAGGAGGAGGCTGTACATCTCG 5150 Query 75048 GAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCG-CGCCTCTGCAATCT 75105 || || || |||| || ||| |||| || ||||||| | || |||||| | | || Sbjct 5151 GAGTGGATGTTCTCGATG-GCGATCTGGAACCCGTAGAAGGCGCGCCGCCTC-GAGACCT 5208 Query 75106 G-TACATCCTTTGAAAAATTCATGTCGA--TATTCTCCATGACGATGCCGTCCGAGGCGG 75162 | || |||| ||| | | || ||||||||| ||||||||||| |||||||| Sbjct 5209 GCCACCTCCTCATGAAACGGCCGGCTGATGTATTCTCCAGGACGATGCCGT-CGAGGCGG 5267 Query 75163 CGAA 75166 |||| Sbjct 5268 CGAA 5271 >seq48767 Length=7835 Score = 109 bits (120), Expect = 6e-19 Identities = 250/371 (67%), Gaps = 14/371 (4%) Strand=Plus/Minus Query 124536 TCTTCGGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGC 124595 || ||||| || |||||| | ||| | ||||||||| | || |||||| | || Sbjct 459 TCATCGGGCTTCTCCTGCTGTAGCATCATCCACATGGCCTCCACATAGTCCCCAGCAAAA 400 Query 124596 CCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCTTG----GCCGT--CTTG 124649 |||||||| || ||| | ||| || ||||| | || ||| ||| |||| Sbjct 399 CCCCAGTCCCGGGAGGCCTTCAGATTCCCGAGGTAGAGCTTCTTCTGGAGCCCAAGCTTG 340 Query 124650 TTCCACTCCGCCAAACCCA-GTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTC 124708 ||| ||| | || | |||||||| || || ||||| | |||||| ||| Sbjct 339 ATCCG----GCCGATGGCACGGGTAATCTTACGGGTAACAAAGTTCTCACCGCGCCGCGG 284 Query 124709 AGACTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTT 124768 ||||| |||||||| || || ||| | || ||||| | || || | |||||||||||| Sbjct 283 CGACTCATGGTTGAAGAGGATACCATTGCATGCAAAAAGACCATATGCCTCGCGGTAGTT 224 Query 124769 TTTCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGG 124828 || ||| | || || ||| || || ||||||| || ||||||| ||| | Sbjct 223 GACAGTGTACCAGTGAGCAGCGACCTTCGAAACAGCATAGGGACTCCGGGGGTGGAAGAG 164 Query 124829 GGTGTTTTCATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTG 124888 |||||||||| || | ||| || || | | ||||||||||| |||| || ||||| Sbjct 163 AGTGTTTTCATCCTGAGGAGG-TGGTGTAGC--GCCAAACATCTCAGAAGACCCAGCCTG 107 Query 124889 ATAGAATTTGA 124899 ||| | |||| Sbjct 106 GTAGTACTTGA 96 >seq124929 Length=386 Score = 105 bits (116), Expect = 7e-18 Identities = 162/229 (71%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 124671 GTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATG 124730 |||||||| || || ||||| | |||||| ||| ||||| |||||||| || || Sbjct 322 GTAATCTTACGGGTAACAAAGTTCTCACCGCGCCGCGGCGACTCATGGTTGAAGAGGATA 263 Query 124731 CCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAG 124790 ||| | || ||||| | || || | |||||||||||| || ||| | || | Sbjct 262 CCATTGCATGCAAAAAGACCATATGCCTCGCGGTAGTTGACAGTGTACCAGTGAGCAGCG 203 Query 124791 AGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTAGGT 124850 | ||| || || ||||||| || ||||||| ||| | |||||||||| || | ||| Sbjct 202 ACCTTCGAAACAGCATAGGGACTCCGGGGGTGGAAGAGAGTGTTTTCATCCTGAGGAGG- 144 Query 124851 TGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAATTTGA 124899 || || | | ||||||||||| |||| || ||||| ||| | |||| Sbjct 143 TGGTGTAGC--GCCAAACATCTCAGAAGACCCAGCCTGGTAGTACTTGA 97 >seq73279 Length=496 Score = 95.1 bits (104), Expect = 1e-14 Identities = 264/400 (66%), Gaps = 14/400 (4%) Strand=Plus/Plus Query 152769 GTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAG 152828 ||||| || |||||| || ||||| ||||| ||| ||||| || ||||| ||||||| Sbjct 77 GTTGATGAGCAAGCCTTTAATGTGAGATCCATCATGATCCTGATCAGTCATTATCATCAA 136 Query 152829 ACGACCGTAGCGCAGGTCACGTAGTGACC-CGTAGACCTTTCCATGTTGAAGCCCGAGGA 152887 | | || || || || || ||||| | || ||| ||||| || | || |||| Sbjct 137 ATGCCCATATCGTAGCG-ACTTAGTGCTATCATATGACTTCCCATGCTGCAATCCAAGGA 195 Query 152888 TCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAA 152947 ||| |||| | | || ||| | ||| || | | || || |||| || || | Sbjct 196 TCTGCTTGATATGGTTAATTTCTTGATTCTCCATTATTTGCTTGTGACTGGCTTCACGGA 255 Query 152948 CATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAACGCTCA 153007 |||| | |||| |||| || |||||||| || | ||||| || ||||| || | Sbjct 256 CATTAAGAAGCTTACCCCTCAGAGGAAACACACCATATCTATTGCGCCCGACAACACTGA 315 Query 153008 GACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGT 153067 || ||||||||||| || || ||||| || || || | || | || ||||| | Sbjct 316 TCCCACTCATAGCAAGGGCCTTGGCTGAGTCTCCTTCTGTCAATATCAAAGTGCAGTCTT 375 Query 153068 GAGACCGATGAGTACCGGCCC----AGTTGGCGTCGTCAAGCTTGGGGATTCCCGTGATC 153123 |||| | | || ||| ||||| || |||||||| | ||| || || | | Sbjct 376 ----CCGAGTACTTCCCTCCCGCATCATTGGCATCATCAAGCTTAGTGATGCCAGTTAGC 431 Query 153124 C--TGCTTTTCTTAGAGCCGTCGGTTTTCTTCAGTTCCTT 153161 | ||| || |||| || || | |||||||| ||||| Sbjct 432 CTTTGCCTT--TTAGTTCCATCATTCTTCTTCAGCTCCTT 469 >seq156240 Length=4198 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1461 TGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1402 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 1401 TGAGCTATGAAAGC 1388 >seq33854 Length=2893 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 906 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 847 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 846 TGAGCTATGAAAGC 833 >seq35733 Length=2303 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| || | ||||||||||||||||||||||||||| ||||| Sbjct 1876 TGCTTTCATTGAGAGTTGAACTTAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1935 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 1936 TGAGCTATGAAAGCAA 1951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545910369984800