Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq105015 104 2e-17 seq38014 102 7e-17 seq26240 95.1 1e-14 seq55212 91.5 1e-13 seq1108 87.8 2e-12 >seq105015 Length=404 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || || || || || | ||| || || |||| || Sbjct 235 CACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGCGTGCGACCGTCTTC 176 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| ||||||||||| ||||||||||||||||| | || | | ||| || ||| Sbjct 175 CAACTGCTTGCCCGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTG 116 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| | | | ||| ||||| ||||| || |||| ||||| | || Sbjct 115 GATCTTGGACTTGACGTTATCGATCGTGTCGCTGGACTCAACCTCCAATGTGATGGTCTT 56 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || ||||| || || || |||||||| Sbjct 55 GCCGGTGAGCGTCTTGACGAAAATTTGCAT 26 >seq38014 Length=3548 Score = 102 bits (112), Expect = 7e-17 Identities = 141/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || ||||||||||| ||||| || || | || || ||||| || || ||||| Sbjct 790 CTCCTTCTGGATATTATAATCAGCAAGAGTACGCCCATCTTCCAGCTGCTTCCCAGCAAA 849 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||| || | |||||| || | || | || |||||||||| ||| ||| ||| | | Sbjct 850 TATCAGCCTCTGCTGATCCGGCGGAATGCCCTCTTTGTCCTGGATCTTCGCTTTCACATT 909 Query 39213 CGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTT 39269 | | ||| || ||| |||||| |||| ||||| ||||||| ||||| || || Sbjct 910 ATCAATCGTGTC---CGAACTCTCCACTTCCAAAGTGATGGTTTTTCCGGTCAGAGTCTT 966 Query 39270 AACAAAGATTTGCATC 39285 || ||||| |||||| Sbjct 967 CACGAAGATCTGCATC 982 >seq26240 Length=11166 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| ||| || || || || || |||||||| || || |||| || Sbjct 9114 CACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTC 9173 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||| || || || | | ||||||||| | ||| | | || |||||| Sbjct 9174 GAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATTCCTTCCTTGTCCTG 9233 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | || ||| |||||| || | ||||| | | Sbjct 9234 GATCTTAGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCT 9292 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 |||| || || ||||| |||||||| ||||||| || Sbjct 9293 TTCCGGTGAGAGTTTTCACAAAGATCTGCATCTGTA 9328 >seq55212 Length=5247 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || | || |||| |||||| || || || || ||||| ||||| || Sbjct 2983 CCACCTCTCAACCTCAAAACCAGATGTAGGGTCGATTCCTTCTGGATATTGTAATCAGCT 2924 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| |||| || || || || || ||||| || | |||||||||||| | || Sbjct 2923 AGGGTTCGACCGTCCTCGAGTTGCTTCCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGG 2864 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCC 39234 | || || |||||| || || |||| | | | ||||| ||| ||| Sbjct 2863 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTATCCGAGCT---CTCA 2807 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | ||||| ||||||| || |||||||| ||||| |||||||| Sbjct 2806 ACTTCAAGGGTGATGGTTTTTCCGGTGAGCGTTTTCACAAAAATTTGCAT 2757 >seq1108 Length=4941 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || ||||| ||| || || || || |||||||| || || || |||| || Sbjct 816 ACCAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCGGCTAGGGTACGGCCGTCCTCG 875 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || || || || | |||||||||||| | ||| | | ||| || ||| | Sbjct 876 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCCTGG 935 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || |||| ||| | | | || ||| |||||| || | ||||| | || Sbjct 936 ATCTTAGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTT 994 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 ||| || || ||||| |||||||| ||||||| || Sbjct 995 TCCGGTGAGGGTTTTCACAAAGATCTGCATCTCTA 1029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428546347533788