Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq87019 163 4e-35 seq33760 105 9e-18 seq42153 93.3 6e-14 >seq87019 Length=1933 Score = 163 bits (180), Expect = 4e-35 Identities = 369/547 (67%), Gaps = 16/547 (3%) Strand=Plus/Plus Query 77730 ATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTT 77789 || ||||| || ||||||||| | | |||||||| || || ||||| || || |||||| Sbjct 1331 ATGATCTCTGTGCATAGATTAGAAGACTTGATAGTTCCAAGGTTTTGCTGATTACTCTTT 1390 Query 77790 TTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATA 77849 | || || || ||||| || || || | ||| | || ||||||||||| | ||| | | Sbjct 1391 CTGTTACAGGAATCCTTGTAGAGCATGTAGGGATTGCCTGTTTCAATCTGGGCTTCCAAA 1450 Query 77850 ATAGATTTCCAGACGACTCT-AGCTTTTA------TCATAGATTTGTATCGCCTCTCTCT 77902 |||| ||| | | ||| ||||| | || ||||||| || |||| | Sbjct 1451 ATAGCAAACCACA-GCTTCTGTGCTTTAACAACACTCCTAGATTT---TC-CCTCAGAC- 1504 Query 77903 TTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962 ||||| || || | | ||||| | || |||||| ||| | | |||||| Sbjct 1505 -TCATAGCCTGTGTACAACTTCTCAAACTTTTCACCCCAACAGTCAGCAAGGCCAGGGGC 1563 Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATC 78022 ||||| ||||| | || ||||| || |||| || | || || ||||| || | ||| Sbjct 1564 CTCATTAGGGCAAAACAGGGACCAATCCCCATTCTCTTGCACACGCTTCATGAACAAATC 1623 Query 78023 AGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCT 78081 || ||||| || || || || | |||||| | ||| | ||||| ||||| ||||| Sbjct 1624 TGGGATCCAAAG-GCCGTAGAACAAATCTCGAGCTCTGTTCTCTTCCTTTCCATGATTCT 1682 Query 78082 TTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAA 78141 | | | || || | || | ||||| | ||||||||| || | ||| || || | | Sbjct 1683 TCCTCAAGTCTAGCCAATCAAATATATCTGCATGCCATGGCTCCAAATAAATAGCAAAAG 1742 Query 78142 CTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCA 78201 | || || ||| || |||||||||| |||| || |||| ||| | || |||| Sbjct 1743 CACCCTTTCTTTTGCCTCCACCCTGATCTACGTATCGAGCTGTGTCATTGAACACCCTCA 1802 Query 78202 ACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGC 78261 ||| |||| || || || ||||| ||||| ||||| ||| || || || |||| | Sbjct 1803 GCATCGGAACTATGCCATTGGATGTACCATTAGTTCCCCTAATGTAGCTGCCCATTGCTC 1862 Query 78262 GAATATT 78268 | ||||| Sbjct 1863 GTATATT 1869 >seq33760 Length=8815 Score = 105 bits (116), Expect = 9e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||||| | ||| ||||| ||||| || |||||| | || | ||||| Sbjct 2994 AGTTCCAGCATTAAAAAGTGTTGGAGAGGCATGGGTGAACCATCGCTGGGACAATAGATG 2935 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| | | |||| || ||||| | ||| || || || || || |||||||| Sbjct 2934 ATATGTTTTGAGAACTGAATCAATGTCATCCTTATGGATGCCAACAGCAACTCGCATCAA 2875 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| || || || |||||||| ||| | | || |||| ||| || |||| | Sbjct 2874 CATGTGTTGTGGCCTTTCAACAACCTTGCCTTGGACCTTTAACAGGTAAGACCTTTCAAG 2815 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 |||||||| ||||| || | || ||||||||| || || || || Sbjct 2814 CGTTTTAAAGCCAAAGTAATCATAGTCAAAGTCTCTGTCATATATGAT 2767 Score = 96.9 bits (106), Expect = 5e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||| ||||||| |||||| | ||||||||| || |||||| |||| | ||||| Sbjct 3818 CTCTCTCTCATATTTAGTATACAAAGCTTCAAATTCTTCACCCCAACAATCAGCTAATCC 3759 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 ||| | ||| | || || | |||||||| || |||| | ||||| || ||| || Sbjct 3758 AGGTGACTCACTAGGACAGAATAATGACCATTCTCCATTAGATTGAACTCTTTGCATGAA 3699 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATC 78049 ||||||||||| ||| || ||| ||| | ||| Sbjct 3698 GAGATCAGGTACCCAAAGTGCATAAAACAAATC 3666 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| |||||||| | ||||| || |||| ||| |||||| | |||||| | ||| || Sbjct 3357 ACCACCCTGATCCACATATCGAGCTGTGTCATTGAAAACTCGAAGCATTGGGACAATGCC 3298 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| ||||| |||||| ||||||||||| | || || ||||| || || Sbjct 3297 ATTGGATGTCCCATTCGTTCCACGTATATAACTTCCTGTGGCACGTATATTGTGGATCGA 3238 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || ||||| || || || | ||| || || | |||||| || || Sbjct 3237 CACACCAATACCTCCAGCTGATTTGCTAATAACAGCACATTCCTTAAGTGTATCATATAT 3178 Query 78338 ACCCTCTATACTGTCATCCATCATG 78362 || || |||||||||||| ||||| Sbjct 3177 GCCTTCAATACTGTCATCCTTCATG 3153 >seq42153 Length=9390 Score = 93.3 bits (102), Expect = 6e-14 Identities = 417/643 (65%), Gaps = 27/643 (4%) Strand=Plus/Plus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAA--TGATATAT 47907 || || |||||||| || | |||||||| || || || || || | ||| |||| || Sbjct 4559 TTCTGGTATTCACCAACCCTCTTCTCGAAGAAGTTGGTCTTCCCCTGCAAACTGATCAAT 4618 Query 47908 TTTCCATAAAATCAAATGGATTAACTGCA--TTATAAAtttttttAAATCCTAATTCTGA 47965 | |||| |||| || ||||| ||||| || || | || | |||| || | Sbjct 4619 T--CCATCCAATCGAAAGGATT--CTGCACATTGTAGAGCTTCCCATATCCCAAAGCATT 4674 Query 47966 AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT 48025 | || ||||| || || ||||| || || |||| | || | |||||| || | Sbjct 4675 GAGCAACCTATCCGCTACAAATTCAATGTACTGACTCATTAAATCCCCATTCATCCCCAC 4734 Query 48026 --AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACT 48083 ||| || || ||||| || | ||||| ||||| ||||||||| | Sbjct 4735 CAAAGCGCAA--GGCAGAGCATCGCACACGAACTCCCTCTCGATCTCCACAGCATCCGCC 4792 Query 48084 ATTATCGATGTTACCGTTTCCTCACTTGG-TGGATA--CAACAAA-TGTTTAAACATTAA 48139 | |||| | | || | |||||||| | | || ||||| | ||| ||| || Sbjct 4793 ACTATCCCTTTCACTTTCTCCTCACTCAGCTTCATCTTCAACAGACTGT----ACAGCAA 4848 Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 || || ||||| || || | ||||||||||| || ||||| || ||||| || || Sbjct 4849 GCAAGCGAAATCGCAGTGCAAGCCTTCATCTCTCGAGATCAATTCATTCGAAAACGTCAG 4908 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGA 48258 || ||||| || || || || || |||||||| | || ||| ||| | || || |||| Sbjct 4909 CCCAGGCATGAGACCGCGCTTCTTCAGCCAAAA-AATGGCGCAGAAGCTCCCGGAGAAGA 4967 Query 48259 ATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTT--GTG 48316 | || ||||| ||| ||| || || | ||||| || ||| | || || | || Sbjct 4968 AGATCCCTTCAACGCACGCGAAGGCAACCAACCTCTCCGCG-AAC-GTCTCCGATCCGTC 5025 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| | | ||||| |||||| ||| || ||||| || || || || || Sbjct 5026 GATCCAGCTCAGCGCCCAGCTCGCCTTCCTCTCGACGCAAGGGATGGTGTCGATCGCGCG 5085 Query 48377 AAAGAGAAAGtttttttCAT-TGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 ||||| | | || || | | | ||| | ||| || || | | || || |||| Sbjct 5086 GAAGAGGCGGCTCTTCTCCTCCGATCACTTGGATGTAGGTCTCGAGGAGGAGGCTGTACA 5145 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAA 48478 | |||||||| || || || || || ||||| || ||||| || Sbjct 5146 TCTCGGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAA 5188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693011354976640