Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq87019 196 7e-45 seq42153 113 6e-20 seq33760 109 8e-19 seq136600 84.2 3e-11 >seq87019 Length=1933 Score = 196 bits (216), Expect = 7e-45 Identities = 392/575 (68%), Gaps = 6/575 (1%) Strand=Plus/Plus Query 76325 ATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTT 76384 || ||||| |||||||||||| | |||||||||||||||| ||||| || || |||||| Sbjct 1331 ATGATCTCTGTGCATAGATTAGAAGACTTGATAGTTCCAAGGTTTTGCTGATTACTCTTT 1390 Query 76385 TTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATA 76444 ||||||| || ||||| || || | | ||| | || ||||||||||| | ||| | | Sbjct 1391 CTGTTACAGGAATCCTTGTAGAGCATGTAGGGATTGCCTGTTTCAATCTGGGCTTCCAAA 1450 Query 76445 ATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCTCTT--TCAT 76502 |||| ||| | | ||| |||| | | | | || ||| ||| |||| Sbjct 1451 ATAGCAAACCACA-GCTTCTGTGCTTTAACA-ACACTCCTAGATTTTCCCTCAGACTCAT 1508 Query 76503 ATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCAT 76562 | ||| || ||| ||||| | || |||||| ||| | | ||||| |||| Sbjct 1509 AGCCTGTGTACAACTTCTCAAACTTTTCACCCCAACAGTCAGCAAGGCCAGGGGCCTCAT 1568 Query 76563 TCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTA 76622 | || || | || ||||| || |||| || | || || ||||| || | ||| || | Sbjct 1569 TAGGGCAAAACAGGGACCAATCCCCATTCTCTTGCACACGCTTCATGAACAAATCTGGGA 1628 Query 76623 TCCATAGAGCAATA-AATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTA 76681 |||| || || || || | |||||| | ||| ||||| ||||| |||||| | Sbjct 1629 TCCAAAG-GCCGTAGAACAAATCTCGAGCTCTGTTCTCTTCCTTTCCATGATTCTTCCTC 1687 Query 76682 AGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCC 76741 | ||||| | || | ||||| | ||||||||| || | ||| || || | | ||||| Sbjct 1688 AAGTCTAGCCAATCAAATATATCTGCATGCCATGGCTCCAAATAAATAGCAAAAGCACCC 1747 Query 76742 GGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATT 76801 || ||| || |||||||||| |||| || |||| ||| | || |||| ||| Sbjct 1748 TTTCTTTTGCCTCCACCCTGATCTACGTATCGAGCTGTGTCATTGAACACCCTCAGCATC 1807 Query 76802 GGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATA 76861 |||| ||||| || ||||||||||| ||||| ||| || || || ||| || ||| Sbjct 1808 GGAACTATGCCATTGGATGTACCATTAGTTCCCCTAATGTAGCTGCCCATTGCTCGTATA 1867 Query 76862 TTACTAATAGATAGGCCTATTCCTCCTGCCATTTT 76896 || |||||| | || || || || || |||| Sbjct 1868 TTGTGAATAGACAATCCAATACCACCCGCAGTTTT 1902 >seq42153 Length=9390 Score = 113 bits (124), Expect = 6e-20 Identities = 414/637 (65%), Gaps = 15/637 (2%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAA--TGATATAT 46396 || ||||||||||| || | |||||||| || || || || || | ||| |||| || Sbjct 4559 TTCTGGTATTCACCAACCCTCTTCTCGAAGAAGTTGGTCTTCCCCTGCAAACTGATCAAT 4618 Query 46397 TTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAA 46456 | |||| |||| || ||||| ||||| || | || | |||| || | | Sbjct 4619 T--CCATCCAATCGAAAGGATTCTGCACATTGTAGAGCTTCCCATATCCCAAAGCATTGA 4676 Query 46457 TCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGA 46516 || ||||| || || ||||| || ||| |||| | || | |||||| || | | Sbjct 4677 GCAACCTATCCGCTACAAATTCAATGTACTGACTCATTAAATCCCCATTCATCCCCACCA 4736 Query 46517 GTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTA 46576 | || ||||| || | ||||| || || |||||||||| | || Sbjct 4737 AAGCGCAAGGCAGAGCATCGCACACGAACTCCCTCTCGATCTCCACAGCATCCGCCACTA 4796 Query 46577 TCGATGTTACTGTTTCCTCACTTGG-TGGATGCATCAAATGTTTAAACATTAAACATGCA 46635 || | | ||| | |||||||| | | || | |||| | | ||| || || || Sbjct 4797 TCCCTTTCACTTTCTCCTCACTCAGCTTCAT-CTTCAACAGACTGTACAGCAAGCAAGCG 4855 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 ||||| || || | |||||||||||| || ||||| || ||||| || ||||||||| Sbjct 4856 AAATCGCAGTGCAAGCCTTCATCTCTCGAGATCAATTCATTCGAAAACGTCAGCCCAGGC 4915 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCC 46754 || || || ||||| || |||||||| || | ||| ||| | || || ||||| || || Sbjct 4916 ATGAGACCGCGCTTCTTCAGCCAAAAAAT-GGCGCAGAAGCTCCCGGAGAAGAAGATCCC 4974 Query 46755 TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACTGGCATCATTATGAATCCAC 46812 ||| || |||||| || || | ||||| || | || ||| | ||||| Sbjct 4975 TTCAACGCACGCGAAGGCAACCAACCTCTCCGCGAACGTCTCCGATC--CGTCGATCCAG 5032 Query 46813 CTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 || | ||||| ||||| ||| || ||||| || || || || || ||||| Sbjct 5033 CTCAGCGCCCAGCTCGCCTTCCTCTCGACGCAAGGGATGGTGTCGATCGCGCGGAAGAGG 5092 Query 46873 AAGtttttttCATCACTAT--CTTTAACATATGTATCTATTAAAAGACTATACATTTCTG 46930 | | || || || | || ||| | || || || | | || || ||||| || | Sbjct 5093 CGGCTCTTCTCCTC-CGATCACTTGGATGTAGGTCTCGAGGAGGAGGCTGTACATCTCGG 5151 Query 46931 AATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967 | || ||||| || || || ||||| || ||||| || Sbjct 5152 AGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAA 5188 >seq33760 Length=8815 Score = 109 bits (120), Expect = 8e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| |||||||| | ||||| || |||| ||| |||||| | |||||| | |||||| Sbjct 3357 ACCACCCTGATCCACATATCGAGCTGTGTCATTGAAAACTCGAAGCATTGGGACAATGCC 3298 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| ||||| |||||| ||||||||||| ||||| ||||| || || Sbjct 3297 ATTGGATGTCCCATTCGTTCCACGTATATAACTTCCTGTGGCACGTATATTGTGGATCGA 3238 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || ||||| || ||| || | |||||| || | ||| ||||| || Sbjct 3237 CACACCAATACCTCCAGCTGATTTGCTAATAACAGCACATTCCTTAAGTGTATCATATAT 3178 Query 76933 GCCCTCTATACTATCATCCATCATG 76957 ||| || ||||| |||||| ||||| Sbjct 3177 GCCTTCAATACTGTCATCCTTCATG 3153 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| | ||| ||||| ||||| ||||||||| | || | ||||| Sbjct 2994 AGTTCCAGCATTAAAAAGTGTTGGAGAGGCATGGGTGAACCATCGCTGGGACAATAGATG 2935 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| | ||||| || || || | ||| || || ||||| || |||||||| Sbjct 2934 ATATGTTTTGAGAACTGAATCAATGTCATCCTTATGGATGCCAACAGCAACTCGCATCAA 2875 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || || || | ||| ||| ||| | | || |||| ||| || |||| | Sbjct 2874 CATGTGTTGTGGCCTTTCAACAACCTTGCCTTGGACCTTTAACAGGTAAGACCTTTCAAG 2815 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||||| ||||| || | || ||||||||| || || || || Sbjct 2814 CGTTTTAAAGCCAAAGTAATCATAGTCAAAGTCTCTGTCATATATGAT 2767 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||| ||||||| ||||| || ||||||||| || |||||| |||| | || || Sbjct 3818 CTCTCTCTCATATTTAGTATACAAAGCTTCAAATTCTTCACCCCAACAATCAGCTAATCC 3759 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| | ||| | ||||| | |||||||| || |||| | ||| | || ||| || Sbjct 3758 AGGTGACTCACTAGGACAGAATAATGACCATTCTCCATTAGATTGAACTCTTTGCATGAA 3699 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 ||||||||||| ||| || ||| ||| | ||| Sbjct 3698 GAGATCAGGTACCCAAAGTGCATAAAACAAATC 3666 >seq136600 Length=929 Score = 84.2 bits (92), Expect = 3e-11 Identities = 200/300 (67%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 76922 GTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATT 76981 ||||| ||||| ||||| || ||||| || |||| || || || || || || Sbjct 851 GTGTCGTAGATACCCTCAATGCTATCCTCTTTCATACACAGGAGGAAGCAACTGCTCAAC 792 Query 76982 TGATGATGAACA-GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTC 77040 ||| | | ||| ||||| ||||| || | ||||| || |||||||||||||| || Sbjct 791 TGAGG-TCTACACGTTCCAGCATTGAAAAGAGTAGGCGAGGCATGAGTGAACCAGCCTTG 733 Query 77041 AGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGC 77100 || | | || || || || | || || |||| || |||||| || |||| Sbjct 732 GGACATTGTATGATAGGTACGGATGGCAGCGTCAATATTGTCTTTATGAATACCAACAGA 673 Query 77101 GACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTA 77160 || | ||| ||||| |||||||| | ||| || ||| ||| || ||| | || Sbjct 672 AACCCTCATTAACATGTGCTGAGGCCTTTCCACTACCTTCCCATTGATCCTCAGTAGATA 613 Query 77161 TGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 || |||||| || || || ||||| || | || ||||||||| || ||||| || Sbjct 612 AGACCTTTCCAGGGTCTTGAATCCAAAGTAATCATAGTAAAAGTCTCGGTCATAAATGAT 553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711233374168320