Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq161 154 3e-32 seq24 100 6e-16 seq606 98.7 2e-15 seq130 98.7 2e-15 seq116 98.7 2e-15 seq87 98.7 2e-15 seq86 98.7 2e-15 seq85 98.7 2e-15 seq77 98.7 2e-15 seq49 98.7 2e-15 >seq161 Length=5110746 Score = 154 bits (170), Expect = 3e-32 Identities = 311/460 (68%), Gaps = 1/460 (0%) Strand=Plus/Plus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229 || || |||||||| ||| |||||| | || || || || || | || ||||| ||| Sbjct 1384235 TCCTTCGCCGAGCGCCTCCTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGT 1384294 Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 |||||||||||||| ||||| ||| || | ||||| || ||| | || ||| Sbjct 1384295 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGAAC 1384354 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAG 230349 ||| ||||| || |||||||| ||||| | |||| | || | || || | Sbjct 1384355 GAGCTCATCTCCCGGGACGAGGGCCTCCACTGCGACTTCGCCTGCCTGCTCTACTCGCTG 1384414 Query 230350 CTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 || ||| |||| ||| ||| ||| | || || || || | | Sbjct 1384415 CTGAAGAGGAAGCCGAGCGAGGAGCGGGTGCGGGGGATCGTGCGCGAGGCCGTGGACATC 1384474 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTT 230469 || | ||||||| | || ||||| | || || ||| | || |||||| || || Sbjct 1384475 GAGAGGGAGTTCGTCTGCGACGCGCTCCCGTGCGCCCTGGTGGGGATGAACCGGGACCTC 1384534 Query 230470 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAA 230529 ||||| ||||||||||| ||||| |||||||| | | | || || | |||| ||| Sbjct 1384535 ATGGGCCAGTACATCGAGTTCGTCGCCGACCGTCTCCTCGGCGCCCTCGACTACGGGAAG 1384594 Query 230530 GTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACC 230589 |||||| | ||||||||| | | ||||||||||| ||||| || ||||||||| Sbjct 1384595 ATGTACAGCGTCCCGAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACC 1384654 Query 230590 AACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 ||||||||||| ||||| ||| | || || ||| |||||| Sbjct 1384655 AACTTCTTCGAGAAGCGGGTCGGGGAGTACCAGAAGGCCT 1384694 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/191 (73%), Gaps = 13/191 (7%) Strand=Plus/Plus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| |||||| ||||| || || | || ||||| |||||||||||||| | ||| Sbjct 1383819 TCTGCATGTTCCCTATCCAGTACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAGGCCT 1383878 Query 229811 CTTTCTGGACCACTGAGGAAGTT--CCTCTGAACGCA-GACGT-CGTCGACTGGCGTGAG 229866 | ||||||||| | ||||| ||| ||||| | || ||| | |||| ||||| || Sbjct 1383879 CCTTCTGGACCGCCGAGGAGGTTGACCTCT---CCCAGGACCTCCGTC-ACTGG---GAC 1383931 Query 229867 AAACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCC 229926 |||| |||||||| || || ||| ||| |||||||| | || ||||| | |||| Sbjct 1383932 TCCCTCACCGACGACGAGCGCCACTTCGTCACCCACATCCTCGCCTTCTTCGCCGCCTCC 1383991 Query 229927 GATGGTATTGT 229937 || || || || Sbjct 1383992 GACGGCATCGT 1384002 >seq24 Length=10012559 Score = 100 bits (110), Expect = 6e-16 Identities = 80/95 (84%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 165687 AAGTCGGCGGACTTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTA 165746 ||||||| |||||| || |||||||||||||||| |||||||||| || || ||| Sbjct 6286937 AAGTCGGAC-ACTTAAGACAAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTA 6286995 Query 165747 ATCTGGTGGTCGTGGGTTCGAGCCCCACGATGGGC 165781 | || |||||||||||||||||||||||| ||||| Sbjct 6286996 ACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGC 6287030 >seq606 Length=848835 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 242640 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 242581 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 242580 CCCACGGTGGGC 242569 >seq130 Length=2958318 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2081572 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2081513 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2081512 CCCACGGTGGGC 2081501 >seq116 Length=10441785 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 786629 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 786688 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 786689 CCCACGGTGGGC 786700 >seq87 Length=12262769 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1997972 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1997913 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1997912 CCCACGGTGGGC 1997901 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 10261703 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10261644 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10261643 CCCACGGTGGGC 10261632 >seq86 Length=7715951 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4527337 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4527396 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4527397 CCCACGGTGGGC 4527408 >seq85 Length=5226098 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4097270 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4097211 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4097210 CCCACGGTGGGC 4097199 >seq77 Length=8408033 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5720124 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5720183 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5720184 CCCACGGTGGGC 5720195 >seq49 Length=4798478 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4742027 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4742086 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4742087 CCCACGGTGGGC 4742098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057330982612880