Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq652 104 2e-17 seq203 91.5 1e-13 >seq652 Length=2384379 Score = 104 bits (114), Expect = 2e-17 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || || ||||| | ||| |||||| ||||| ||||||||||| || ||| Sbjct 465142 AAAATTCAGGACAAGGAAGGCATTCCCCCAGATCAGCAAAGGCTTATCTTTGCCGGGAAA 465201 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||||| || ||| | ||| |||| ||||| || || |||||||| || ||||||||| Sbjct 465202 CAACTTGAGGATGGTAGGACTTTGGCGGATTATAACATCCAGAAGGAGTCCACTCTTCAC 465261 Query 29166 ATGGTGTTACGATTACGAGGAGGG 29189 ||||| | ||||| |||| ||| Sbjct 465262 TTGGTGCTGCGATT--GAGGGGGG 465283 >seq203 Length=8626763 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| | |||||||| || || ||| || |||| | | Sbjct 5729930 ATGCAAATCTTTGTGAAAACCCTTACGGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 5729989 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||||||| || || ||||| | || || || Sbjct 5729990 GACACAATCGATAATGTAAAAGCAAAAATTCAAGACAAGGAAGGGATCCCTCCGGACCAG 5730049 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| ||||| || || |||||| | ||| |||||||||| || Sbjct 5730050 CAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGAACCTTGGCCGATTATAAC 5730109 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||| ||||| || ||| ||||| Sbjct 5730110 ATTCAGAAGGAGTCTACCCTCCACTTGGTG 5730139 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || ||||| ||| | || || || ||||| || ||||||||||| ||| Sbjct 5730698 AAAATTCAGGACAAAGAGGGTATTCCTCCGGACCAGCAAAGGCTGATCTTTGCGGGTAAA 5730757 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||||| |||||| || || ||||||| |||||||| || |||||||| || || ||| Sbjct 5730758 CAACTTGAAGATGGCAGGACACTGGCCGACTACAATATCCAAAAGGAATCGACCCTCCAC 5730817 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || | || || || ||||| || ||| |||| | | Sbjct 5730386 ATGCAGATTTTCGTGAAGACGCTTACCGGGAAGACCATAACTTTGGAAGTGGAAAGCTCG 5730445 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| |||||| || || || ||| | ||| || || Sbjct 5730446 GACACCATTGACAATGTTAAGGCGAAAATTCAAGACAAGGAGGGTATTCCCCCGGACCAG 5730505 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||||||||| || ||||| || || |||||| || ||| | || || || || Sbjct 5730506 CAGAGACTTATCTTCGCTGGCAAGCAGCTTGAAGATGGCAGGACTCTTGCAGACTATAAC 5730565 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATT 29179 || ||||| || |||||||| ||| ||||| | || || Sbjct 5730566 ATCCAGAAAGAGTCTACTCTCCACTTGGTGCTCCGTTT 5730603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428146104730280