Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq652 104 2e-17
seq203 91.5 1e-13
>seq652
Length=2384379
Score = 104 bits (114), Expect = 2e-17
Identities = 110/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105
|||||| || || ||||| | ||| |||||| ||||| ||||||||||| || |||
Sbjct 465142 AAAATTCAGGACAAGGAAGGCATTCCCCCAGATCAGCAAAGGCTTATCTTTGCCGGGAAA 465201
Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165
||||| || ||| | ||| |||| ||||| || || |||||||| || |||||||||
Sbjct 465202 CAACTTGAGGATGGTAGGACTTTGGCGGATTATAACATCCAGAAGGAGTCCACTCTTCAC 465261
Query 29166 ATGGTGTTACGATTACGAGGAGGG 29189
||||| | ||||| |||| |||
Sbjct 465262 TTGGTGCTGCGATT--GAGGGGGG 465283
>seq203
Length=8626763
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| || | ||||| | |||||||| || || ||| || |||| | |
Sbjct 5729930 ATGCAAATCTTTGTGAAAACCCTTACGGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 5729989
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | || | || ||||||| || || ||||| | || || ||
Sbjct 5729990 GACACAATCGATAATGTAAAAGCAAAAATTCAAGACAAGGAAGGGATCCCTCCGGACCAG 5730049
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| || ||||||||||| ||||| || || |||||| | ||| |||||||||| ||
Sbjct 5730050 CAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGAACCTTGGCCGATTATAAC 5730109
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171
||||||||||| ||||| || ||| |||||
Sbjct 5730110 ATTCAGAAGGAGTCTACCCTCCACTTGGTG 5730139
Score = 86.0 bits (94), Expect = 5e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105
|||||| || ||||| ||| | || || || ||||| || ||||||||||| |||
Sbjct 5730698 AAAATTCAGGACAAAGAGGGTATTCCTCCGGACCAGCAAAGGCTGATCTTTGCGGGTAAA 5730757
Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165
||||| |||||| || || ||||||| |||||||| || |||||||| || || |||
Sbjct 5730758 CAACTTGAAGATGGCAGGACACTGGCCGACTACAATATCCAAAAGGAATCGACCCTCCAC 5730817
Score = 82.4 bits (90), Expect = 7e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || ||| | || || | || || || ||||| || ||| |||| | |
Sbjct 5730386 ATGCAGATTTTCGTGAAGACGCTTACCGGGAAGACCATAACTTTGGAAGTGGAAAGCTCG 5730445
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | || ||||| |||||| || || || ||| | ||| || ||
Sbjct 5730446 GACACCATTGACAATGTTAAGGCGAAAATTCAAGACAAGGAGGGTATTCCCCCGGACCAG 5730505
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| ||||||||||| || ||||| || || |||||| || ||| | || || || ||
Sbjct 5730506 CAGAGACTTATCTTCGCTGGCAAGCAGCTTGAAGATGGCAGGACTCTTGCAGACTATAAC 5730565
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATT 29179
|| ||||| || |||||||| ||| ||||| | || ||
Sbjct 5730566 ATCCAGAAAGAGTCTACTCTCCACTTGGTGCTCCGTTT 5730603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428146104730280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |