Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq652 95.1 1e-14
seq203 86.0 5e-12
>seq652
Length=2384379
Score = 95.1 bits (104), Expect = 1e-14
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178
|||||| || || ||||| | ||| |||||| ||||| ||||||||||| || |||
Sbjct 465142 AAAATTCAGGACAAGGAAGGCATTCCCCCAGATCAGCAAAGGCTTATCTTTGCCGGGAAA 465201
Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238
||| | || ||| | ||| |||| ||||| || || || ||||| || |||||||||
Sbjct 465202 CAACTTGAGGATGGTAGGACTTTGGCGGATTATAACATCCAGAAGGAGTCCACTCTTCAC 465261
Query 25239 ATGGTGTTACGATTACGAGGAGGG 25262
||||| | ||||| |||| |||
Sbjct 465262 TTGGTGCTGCGATT--GAGGGGGG 465283
>seq203
Length=8626763
Score = 86.0 bits (94), Expect = 5e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178
|||||| || ||||| ||| | || || || ||||| || ||||||||||| |||
Sbjct 5730698 AAAATTCAGGACAAAGAGGGTATTCCTCCGGACCAGCAAAGGCTGATCTTTGCGGGTAAA 5730757
Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238
||| | |||||| || || ||||||| |||||||| ||||||||||| || || |||
Sbjct 5730758 CAACTTGAAGATGGCAGGACACTGGCCGACTACAATATCCAAAAGGAATCGACCCTCCAC 5730817
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| || | ||||| | |||||||| || || ||| || |||| | |
Sbjct 5729930 ATGCAAATCTTTGTGAAAACCCTTACGGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 5729989
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | || | || ||||||| || || ||||| | || || ||
Sbjct 5729990 GACACAATCGATAATGTAAAAGCAAAAATTCAAGACAAGGAAGGGATCCCTCCGGACCAG 5730049
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
|| || ||||||||||| ||||| || | |||||| | ||| |||||||||| ||
Sbjct 5730050 CAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGAACCTTGGCCGATTATAAC 5730109
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244
||||| ||||| ||||| || ||| |||||
Sbjct 5730110 ATTCAGAAGGAGTCTACCCTCCACTTGGTG 5730139
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410614680427664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |