Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq652 95.1 1e-14 seq203 86.0 5e-12 >seq652 Length=2384379 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || || ||||| | ||| |||||| ||||| ||||||||||| || ||| Sbjct 465142 AAAATTCAGGACAAGGAAGGCATTCCCCCAGATCAGCAAAGGCTTATCTTTGCCGGGAAA 465201 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | || ||| | ||| |||| ||||| || || || ||||| || ||||||||| Sbjct 465202 CAACTTGAGGATGGTAGGACTTTGGCGGATTATAACATCCAGAAGGAGTCCACTCTTCAC 465261 Query 25239 ATGGTGTTACGATTACGAGGAGGG 25262 ||||| | ||||| |||| ||| Sbjct 465262 TTGGTGCTGCGATT--GAGGGGGG 465283 >seq203 Length=8626763 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || ||||| ||| | || || || ||||| || ||||||||||| ||| Sbjct 5730698 AAAATTCAGGACAAAGAGGGTATTCCTCCGGACCAGCAAAGGCTGATCTTTGCGGGTAAA 5730757 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | |||||| || || ||||||| |||||||| ||||||||||| || || ||| Sbjct 5730758 CAACTTGAAGATGGCAGGACACTGGCCGACTACAATATCCAAAAGGAATCGACCCTCCAC 5730817 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| | |||||||| || || ||| || |||| | | Sbjct 5729930 ATGCAAATCTTTGTGAAAACCCTTACGGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 5729989 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || ||||||| || || ||||| | || || || Sbjct 5729990 GACACAATCGATAATGTAAAAGCAAAAATTCAAGACAAGGAAGGGATCCCTCCGGACCAG 5730049 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| ||||| || | |||||| | ||| |||||||||| || Sbjct 5730050 CAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGAACCTTGGCCGATTATAAC 5730109 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||| ||||| ||||| || ||| ||||| Sbjct 5730110 ATTCAGAAGGAGTCTACCCTCCACTTGGTG 5730139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410614680427664