Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq49 125 1e-23 seq652 122 1e-22 seq203 102 1e-16 seq18 84.2 3e-11 >seq49 Length=4798478 Score = 125 bits (138), Expect = 1e-23 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | ||||| || || || ||||| || ||| | || |||| ||| Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| || || ||| | ||| |||||||| || |||||||| || || || |||| Sbjct 2869973 -TGACACTATCGACAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATTCCCCCGGATC 2870031 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||||||||| || ||||| |||| ||| || | || | | |||||||| Sbjct 2870032 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTATA 2870091 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT 124754 | || || ||||| || ||| | || |||||| | ||| Sbjct 2870092 ACATCCAGAAAGAGTCGACTCTTCACTTGGTTCTGCGT 2870129 Score = 114 bits (126), Expect = 2e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | ||||| || || || ||||| || ||| | || |||| ||| Sbjct 2840857 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2840916 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| || || || | ||| ||||||||| || || ||||| || || || |||| Sbjct 2840917 -TGACACCATCGACAACGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGATC 2840975 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||||||||| || ||||| |||| ||| || | || || | ||||| | Sbjct 2840976 AGCAGAGGCTTATTTTTGCCGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACA 2841035 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 | || || ||||| || ||| | || |||||| Sbjct 2841036 ACATCCAGAAAGAGTCCACTCTTCACTTGGTT 2841067 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || || | ||| ||||| | Sbjct 2840402 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTTGAAAGCTCT 2840461 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | || || ||||||||||| || || || || || || || Sbjct 2840462 GACACGATTGATAATGTCAAGGCCAAGATTCAAGATAAGGAGGGAATCCCCCCAGACCAG 2840521 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || |||||||| || || | |||||| |||| || | | |||||||| Sbjct 2840522 CAGAGGCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACCCTGGCTGATTATAAC 2840581 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || | |||||||| | ||| | ||||||| || Sbjct 2840582 ATCCAGAAGGAATCCACCCTCCATTTGGTGCTTCGTCTGAGAGGTGGCAT 2840631 Score = 105 bits (116), Expect = 1e-17 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | ||||| || || || ||||| || ||| | || |||| ||| Sbjct 2846845 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2846904 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| || || || | ||| |||||||| || || ||||| || || || |||| Sbjct 2846905 -TGACACCATCGACAACGTCAAAGCAAAAATTCAGGACAAGGAAGGCATTCCCCCGGATC 2846963 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||||||||| || ||||| |||| ||| || | || || | ||||| | Sbjct 2846964 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACA 2847023 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 | || || || || || ||| | || |||||| Sbjct 2847024 ACATCCAGAAGGAGTCCACTCTTCACTTGGTT 2847055 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || ||||| ||||| ||| | || | || ||| Sbjct 2841086 ATGCAGATTTTTGTGAAGACTCTGACTGGCAAGACTATCACTTTGGAAGTCGAGAGCTCG 2841145 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | ||| ||| || || || || ||||| || || || || || Sbjct 2841146 -GACACGATTGATAATGTCAAAGCGAAGATACAGGACAAGGAAGGCATTCCCCCAGACCA 2841204 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | ||||||||||| ||||| | |||||| | || ||| | | ||||| || Sbjct 2841205 GCAGCGGTTGATTTTTGCAGGGAAACAGCTCGAGGATGGCCGGACACTGGCCGATTACAA 2841264 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||| || || || | ||| | || | ||| | || ||||| || Sbjct 2841265 TATTCAAAAGGAGTCGACGCTCCATCTTGTCCTCCGTCTGCGTGGTGGGAT 2841315 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || || | ||| ||||| Sbjct 2846391 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTTGAAAGCTCC 2846450 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || |||| | || || ||||||||||| || || || || || || || Sbjct 2846451 GACACGATCGATAATGTTAAGGCCAAGATTCAAGATAAGGAGGGAATCCCCCCAGACCAG 2846510 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || |||||| | || || | |||||| |||| || | | |||||||| Sbjct 2846511 CAGAGGCTCATCTTTGCAAGCAAGCAGCTCGAGGATGGTCGCACCCTGGCTGATTATAAC 2846570 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || | ||| || | |||||||| | ||| | ||||||| || Sbjct 2846571 ATCCAGAAGGGATCCACCCTCCATTTGGTGCTTCGTCTGAGAGGTGGCAT 2846620 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| | ||| | ||||| || || ||||| ||||| || | || |||| ||| Sbjct 2847074 ATGCAGGTTTTTGTGAAGACTCTGACTGGCAAGACTATCACCTTGGAAGTTGAGAGCTCG 2847133 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | ||| ||| || || || || || || || || || || || Sbjct 2847134 -GACACGATTGATAATGTCAAAGCGAAGATACAGGACAAGGAGGGCATTCCCCCAGACCA 2847192 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | ||||||||||| || ||| | | |||| | || ||| | | ||||| || Sbjct 2847193 GCAGCGGTTGATTTTTGCAGGGAAGCAACTCGGGGATGGCCGGACACTGGCCGATTACAA 2847252 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || ||| | ||| | || | ||| | || ||||| || Sbjct 2847253 CATTCAAAAGGAGTCGACTCTCCATCTTGTCCTCCGTCTGCGTGGTGGGAT 2847303 >seq652 Length=2384379 Score = 122 bits (134), Expect = 1e-22 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | ||||| ||||| || || || || || | || |||| ||| Sbjct 465057 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACCTTGGAAGTTGAGAGCTC 465116 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| || ||| ||| | ||| ||||||||| || || ||||| || || || |||| Sbjct 465117 -TGACACCATTGACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCAGATC 465175 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||||||||||| ||||| || |||||| | |||||| || | || || | ||||||| Sbjct 465176 AGCAAAGGCTTATCTTTGCCGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTATA 465235 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 | || || || || || ||| | || ||||| Sbjct 465236 ACATCCAGAAGGAGTCCACTCTTCACTTGGT 465266 >seq203 Length=8626763 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || ||||| || || || | ||| | ||| Sbjct 5729930 ATGCAAATCTTTGTGAAAACCCTTACGGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 5729989 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| |||| ||||| ||||||||||| || ||||| || || || || || Sbjct 5729990 GACACAATCGATAATGTAAAAGCAAAAATTCAAGACAAGGAAGGGATCCCTCCGGACCAG 5730049 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||| ||||| || || || | || ||| | ||||| || | |||||||| Sbjct 5730050 CAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGAACCTTGGCCGATTATAAC 5730109 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||| || || || || | || ||||| Sbjct 5730110 ATTCAGAAGGAGTCTACCCTCCACTTGGT 5730138 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| || || || || || || || |||| |||| ||| Sbjct 5730158 ATGCAAATCTTTGTGAAGACCCTCACTGGGAAGACAATTACCCTAGAAGTTGAGAGCTC- 5730216 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || || ||||| || || ||||| ||||| || || Sbjct 5730217 TGACACCATTGACAATGTCAAGGCTAAGATCCAAGACAAGGAGGGTATTCCACCGGACCA 5730276 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| |||||||||||||| || | || ||| | | || | | || || || Sbjct 5730277 GCAGAGGCTCATTTTTGCAGGAAAGCAGCTTGAAGATGGCAGGACGCTTGCGGACTACAA 5730336 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| || | || ||||| | ||||| || ||||| || Sbjct 5730337 CATCCAGAAAGAATCCACACTCCACTTGGTGCTCCGTTTGCGGGGTGGGAT 5730387 >seq18 Length=12238210 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 205736 TAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTAT 205795 ||||||||||||| ||||||||||| ||||||||||| || || |||||||||| || || Sbjct 5540246 TAGCACCAAAATGCCGCCATTGAAAGCCATAAACTGGTCCCAAGTCACCTTCTTCTCGAT 5540305 Query 205796 CATTAAAACCA 205806 | || | |||| Sbjct 5540306 CTTTCAGACCA 5540316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755112494156800