Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq91 98.7 1e-15
seq49 93.3 6e-14
>seq91
Length=4251426
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
||||| || || || || || |||| ||| | ||| || || || || ||||| |||
Sbjct 285772 GTTCCTCCCCTGAGCCTCAACACCAGATGAAGAGTCGACTCCTTTTGGATGTTATAGTCT 285831
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| |||||||| | ||| || ||||| || |||||||||||||||| || || ||||||
Sbjct 285832 GCAAGAGTTCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAATCGCTGTTGGTCCGGA 285891
Query 146168 GGAATTCCTTCTTTATC 146184
||||| ||||| || ||
Sbjct 285892 GGAATACCTTCCTTGTC 285908
>seq49
Length=4798478
Score = 93.3 bits (102), Expect = 6e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
||||| || | ||| || ||||| || |||||||||| ||||| || | ||| |||
Sbjct 2870122 ACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCTTCT 2870063
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
| ||||| ||||||||||| | || ||||||||||| ||||| |||||||| || ||
Sbjct 2870062 AGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCTTTGTCCTG 2870004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743188318545920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |