Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq18 109 4e-19 >seq18 Length=12238210 Score = 109 bits (120), Expect = 4e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || ||||| ||| |||||||| |||||||||||||| || || ||||| ||| Sbjct 5539918 CAGTTCTATGTTGCAAATGGGGAATTGTCATGTCAAATGTATCAGCGCTCTGCTGACATG 5539859 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 ||| |||| || || ||||||||||| |||||| || ||||| | |||||||| ||| Sbjct 5539858 GGATTGGGAGTGCCATTCAATATTGCTTCTTATGCTCTCCTTACATGCATGATTGCTCAT 5539799 Query 20551 GTT 20553 ||| Sbjct 5539798 GTT 5539796 Score = 105 bits (116), Expect = 5e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| ||||| ||| ||||||| ||||||||||||||| || || ||||| ||| Sbjct 5506890 CAGTTTTATGTTGCAAATGGGGAATTGTGGTGTCAAATGTATCAGCGCTCTGCTGACATG 5506831 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 ||| ||| || || ||||| ||||| |||||| || ||||| | ||||||||| || Sbjct 5506830 GGATTGGTAGTGCCATTCAACATTGCTTCTTATGCTCTCCTTACATGCATGATTGCAAAT 5506771 Query 20551 GTT 20553 ||| Sbjct 5506770 GTT 5506768 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| ||||| ||| ||||||| ||||||||||||||| | || ||||| ||| Sbjct 5483779 CAGTTTTATGTTGCAAATGGGGAATTGTGGTGTCAAATGTATCAGCACTCTGCTGACATG 5483720 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 ||| ||| || || ||||| ||||| |||||| || ||||| | |||||||| || Sbjct 5483719 GGATTGGTAGTGCCATTCAACATTGCTTCTTATGCTCTCCTTACATGCATGATTGCTGAT 5483660 Query 20551 GTT 20553 ||| Sbjct 5483659 GTT 5483657 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| ||||| ||| ||||||| ||||||||||||||| | || ||||| ||| Sbjct 5521538 CAGTTTTATGTTGCAAATGGGGAATTGTGGTGTCAAATGTATCAGCACTCTGCTGACATG 5521479 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 ||| ||| || || |||| ||||| ||| || || ||||||| |||||||| || Sbjct 5521478 GGATTGGTAGTGCCATTCAGCATTGCTTCTTACGCTCTCCTTACGTGCATGATTGCTAAT 5521419 Query 20551 GTT 20553 ||| Sbjct 5521418 GTT 5521416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399007028759320