Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq18 109 4e-19
>seq18
Length=12238210
Score = 109 bits (120), Expect = 4e-19
Identities = 98/123 (80%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490
|| || || ||||| ||| |||||||| |||||||||||||| || || ||||| |||
Sbjct 5539918 CAGTTCTATGTTGCAAATGGGGAATTGTCATGTCAAATGTATCAGCGCTCTGCTGACATG 5539859
Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550
||| |||| || || ||||||||||| |||||| || ||||| | |||||||| |||
Sbjct 5539858 GGATTGGGAGTGCCATTCAATATTGCTTCTTATGCTCTCCTTACATGCATGATTGCTCAT 5539799
Query 20551 GTT 20553
|||
Sbjct 5539798 GTT 5539796
Score = 105 bits (116), Expect = 5e-18
Identities = 97/123 (79%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490
|| ||||| ||||| ||| ||||||| ||||||||||||||| || || ||||| |||
Sbjct 5506890 CAGTTTTATGTTGCAAATGGGGAATTGTGGTGTCAAATGTATCAGCGCTCTGCTGACATG 5506831
Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550
||| ||| || || ||||| ||||| |||||| || ||||| | ||||||||| ||
Sbjct 5506830 GGATTGGTAGTGCCATTCAACATTGCTTCTTATGCTCTCCTTACATGCATGATTGCAAAT 5506771
Query 20551 GTT 20553
|||
Sbjct 5506770 GTT 5506768
Score = 96.9 bits (106), Expect = 3e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490
|| ||||| ||||| ||| ||||||| ||||||||||||||| | || ||||| |||
Sbjct 5483779 CAGTTTTATGTTGCAAATGGGGAATTGTGGTGTCAAATGTATCAGCACTCTGCTGACATG 5483720
Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550
||| ||| || || ||||| ||||| |||||| || ||||| | |||||||| ||
Sbjct 5483719 GGATTGGTAGTGCCATTCAACATTGCTTCTTATGCTCTCCTTACATGCATGATTGCTGAT 5483660
Query 20551 GTT 20553
|||
Sbjct 5483659 GTT 5483657
Score = 91.5 bits (100), Expect = 1e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490
|| ||||| ||||| ||| ||||||| ||||||||||||||| | || ||||| |||
Sbjct 5521538 CAGTTTTATGTTGCAAATGGGGAATTGTGGTGTCAAATGTATCAGCACTCTGCTGACATG 5521479
Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550
||| ||| || || |||| ||||| ||| || || ||||||| |||||||| ||
Sbjct 5521478 GGATTGGTAGTGCCATTCAGCATTGCTTCTTACGCTCTCCTTACGTGCATGATTGCTAAT 5521419
Query 20551 GTT 20553
|||
Sbjct 5521418 GTT 5521416
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399007028759320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |