Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq12 104 5e-17 >seq12 Length=4956709 Score = 104 bits (114), Expect = 5e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 |||||| || ||||| | ||||| ||| ||||| || |||| || || || || || | Sbjct 4012531 AGATTTTGATTACGACTACTTTGGTTTTAAAACACTCGAGAGGTCTTACCTTCTGAAGGT 4012472 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 | || ||| | |||||| || |||||||||||||||| | || ||||| || ||||| Sbjct 4012471 CCAAGGGAAGGTTGTGGAAAGACCTCAGCACATGTTGATGAGGGTTGCTGTTGGAATTCA 4012412 Query 248928 CAAGGATGACATAGA 248942 |||||||||||| || Sbjct 4012411 CAAGGATGACATCGA 4012397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073265952378368