Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq49 109 4e-19
seq203 82.4 6e-11
>seq49
Length=4798478
Score = 109 bits (120), Expect = 4e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||||| || | || |||| |||||| || || ||||| || |||||||| || |||
Sbjct 2841084 CCTCCCCTCAGGCGCAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCCGCC 2841025
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || ||| |||||| | ||||| || ||| | ||||| || || |||||| |||
Sbjct 2841024 AAAGTCCTACCATCTTCTAGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGATCCGGGGGA 2840965
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||||||||| || ||||| | |||| ||| | | | |||||| | |||
Sbjct 2840964 ATGCCTTCCTTGTCCTGAATTT-TCGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCAAC 2840906
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | ||||| |||| || || | || || |||||||||||||||
Sbjct 2840905 TTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTCACAAAAATTTGCATT 2840857
Score = 104 bits (114), Expect = 2e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| |||||| || || || || || |||||||| || |||| || ||| ||||
Sbjct 2847057 AGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATCT 2846998
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|| | ||||| || ||| | ||||| || || |||||| ||| | ||||||||| ||
Sbjct 2846997 TCTAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCC 2846938
Query 18234 GCAATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
||||| |||||| ||| | | | |||||| | ||| ||| | ||||| |
Sbjct 2846937 TGAATTT-TTGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCAACTTCCAAAGTGATTGT 2846879
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| || || | || || |||||||||||||||
Sbjct 2846878 TTTCCCAGTAAGGGTCTTCACAAAAATTTGCATT 2846845
>seq203
Length=8626763
Score = 82.4 bits (90), Expect = 6e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | || || | ||| || || ||||| ||||| || |||||||||||
Sbjct 5730841 TCCACCGCGGAGACGGAGGACAAGGTGGAGGGTCGATTCCTTTTGGATATTGTAGTCGGC 5730782
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCC 18212
|| ||| | | |||||| | |||||| |||||| |||| || ||||| || |||
Sbjct 5730781 CAGTGTCCTGCCATCTTCAAGTTGTTTACCCGCAAAGATCAGCCTTTGCTGGTCC 5730727
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379175824476120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |