Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq12 104 3e-17 >seq12 Length=4956709 Score = 104 bits (114), Expect = 3e-17 Identities = 169/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 80322 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 80381 |||| | ||| ||||| ||||| || | ||| || ||||| || || |||||| | Sbjct 4012306 TTGGGGCCGAGGTGTTCCTGCATTGAACAGGGTGGGGGAAGCATGAGTGAACCATCGCTG 4012365 Query 80382 AGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCG 80440 ||||| | || || || | || || || || || || | ||| |||||||| || | Sbjct 4012366 AGACATCATATGATATGTTTTGATGGCAGAGTCGATGTCATCCTTG-TGAATTCCAACAG 4012424 Query 80441 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 80500 | || | ||| |||||||||||||||||||| || | ||| | | |||| | || Sbjct 4012425 CAACCCTCATCAACATGTGCTGAGGTCTTTCCACAACCTTCCCTTGGACCTTCAGAAGGT 4012484 Query 80501 AAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 80560 |||| | || | |||||||||||||| |||| ||| ||| ||||| || || || | Sbjct 4012485 AAGACCTCTCGAGTGTTTTAAAACCAAAGTAGTCGTAATCAAAATCTCGGTCATAGATTA 4012544 Query 80561 T 80561 | Sbjct 4012545 T 4012545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717942203176640