Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq49 114 1e-20 seq652 87.8 1e-12 >seq49 Length=4798478 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | || | ||||| || ||||||||| | ||||||||||| | Sbjct 2841312 CCACCACGCAGACGGAGGACAAGATGGAGCGTCGACTCCTTTTGAATATTGTAATCGGCC 2841253 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || | || || | ||||| || ||||||||||| ||||| || || | || Sbjct 2841252 AGTGTCCGGCCATCCTCGAGCTGTTTCCCTGCAAAAATCAACCGCTGCTGGTCTGGGGGA 2841193 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || ||| ||| | ||||||| | ||| ||||| | ||| ||||| Sbjct 2841192 ATGCCTTCCTTGTC-CTGTATCTTCGCTTTGACATTATCAATCGTGTC-CGAGCTCTCGA 2841135 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || ||||| || || || ||||| ||||||||||| ||||| Sbjct 2841134 CTTCCAAAGTGATAGTCTTGCCAGTCAGAGTCTTCACAAAAATCTGCAT 2841086 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | || | ||||| ||| ||||||||| | |||||||||| | Sbjct 2847300 CCACCACGCAGACGGAGGACAAGATGGAGAGTCGACTCCTTTTGAATGTTGTAATCGGCC 2847241 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || | || | | ||| || || ||||||||||| ||||| || || | || Sbjct 2847240 AGTGTCCGGCCATCCCCGAGTTGCTTCCCTGCAAAAATCAACCGCTGCTGGTCTGGGGGA 2847181 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | || || || || ||| ||| | ||||||| | ||| ||||| | ||| ||| | Sbjct 2847180 ATGCCCTCCTTGTC-CTGTATCTTCGCTTTGACATTATCAATCGTGTC-CGAGCTCTCAA 2847123 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || ||||| || || || ||||| |||||||||| ||||| Sbjct 2847122 CTTCCAAGGTGATAGTCTTGCCAGTCAGAGTCTTCACAAAAACCTGCAT 2847074 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | ||| | | ||||| || | |||| ||| || || | |||||||| | Sbjct 2841085 GCCTCCCCTCAGGCGCAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCCGC 2841026 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || | | || || | ||||| ||||||||||| | | ||| ||||| | || Sbjct 2841025 CAAAGTCCTACCATCTTCTAGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGATCCGGGGG 2840966 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCG 43059 | ||||| || || |||| | | ||||||| || | | ||||| ||| ||| Sbjct 2840965 AATGCCTTCCTTGTC-CTGAATTTTCGCTTTGACGTTGTCGATGGTGTCAG-AGCTCTCA 2840908 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || | || || ||||| || || || || |||||||||||||||||| Sbjct 2840907 ACTTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTCACAAAAATTTGCATT 2840857 >seq652 Length=2384379 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||| | ||| | ||| ||||||||| | |||||||| | | Sbjct 465512 CCACCACGGAGGCGAAGCACAAGATGTAGAGTTGACTCCTTTTGGATGTTGTAATCCGCC 465453 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || | || || | || || || ||||||||||| | ||| ||||| | || Sbjct 465452 AGTGTCCGGCCATCCTCGAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGATCTGGGGGA 465393 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || ||| ||| ||||||| | |||| || || | ||| ||||| Sbjct 465392 ATGCCTTCCTTGTC-CTGTATCTTAGCTTTGACATTATCAACGGTATC-CGAGCTCTCGA 465335 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||||| || || ||||| || || || ||||| || ||||| Sbjct 465334 CTTCCAAAGTTATGGTCTTCCCGGTAAGGGTCTTGACAAATATCTGCAT 465286 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | ||||| || | ||| ||| || || | || ||||||| Sbjct 465741 GCCACCACGCAGACGAAGGACCAAGTGCAGAGTTGACTCTTTCTGGATGTTATAATCGGC 465682 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || ||| | | |||| |||| ||| || ||||||||||||| | ||| || || | || Sbjct 465681 CAGTGTCCTTCCGTCTTCCAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCTGGAGG 465622 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | || || || | | ||||| | ||| || Sbjct 465621 GATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCTGAACTCTCCAC 465562 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || |||||||| ||||| || |||||||| |||||| Sbjct 465561 CTCCAGAGTGATGGTCTTTCCGGTCAGAGTCTTGACAAAAATCTGCATT 465513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381200526461808