Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq49 114 1e-20
seq652 87.8 1e-12
>seq49
Length=4798478
Score = 114 bits (126), Expect = 1e-20
Identities = 166/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| |||||||| | | || | ||||| || ||||||||| | ||||||||||| |
Sbjct 2841312 CCACCACGCAGACGGAGGACAAGATGGAGCGTCGACTCCTTTTGAATATTGTAATCGGCC 2841253
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||| || | || || | ||||| || ||||||||||| ||||| || || | ||
Sbjct 2841252 AGTGTCCGGCCATCCTCGAGCTGTTTCCCTGCAAAAATCAACCGCTGCTGGTCTGGGGGA 2841193
Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060
| ||||| || || ||| ||| | ||||||| | ||| ||||| | ||| |||||
Sbjct 2841192 ATGCCTTCCTTGTC-CTGTATCTTCGCTTTGACATTATCAATCGTGTC-CGAGCTCTCGA 2841135
Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
| || | || ||||| || || || ||||| ||||||||||| |||||
Sbjct 2841134 CTTCCAAAGTGATAGTCTTGCCAGTCAGAGTCTTCACAAAAATCTGCAT 2841086
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| |||||||| | | || | ||||| ||| ||||||||| | |||||||||| |
Sbjct 2847300 CCACCACGCAGACGGAGGACAAGATGGAGAGTCGACTCCTTTTGAATGTTGTAATCGGCC 2847241
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||| || | || | | ||| || || ||||||||||| ||||| || || | ||
Sbjct 2847240 AGTGTCCGGCCATCCCCGAGTTGCTTCCCTGCAAAAATCAACCGCTGCTGGTCTGGGGGA 2847181
Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060
| || || || || ||| ||| | ||||||| | ||| ||||| | ||| ||| |
Sbjct 2847180 ATGCCCTCCTTGTC-CTGTATCTTCGCTTTGACATTATCAATCGTGTC-CGAGCTCTCAA 2847123
Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
| || | || ||||| || || || ||||| |||||||||| |||||
Sbjct 2847122 CTTCCAAGGTGATAGTCTTGCCAGTCAGAGTCTTCACAAAAACCTGCAT 2847074
Score = 82.4 bits (90), Expect = 6e-11
Identities = 160/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941
|||||| | ||| | | ||||| || | |||| ||| || || | |||||||| |
Sbjct 2841085 GCCTCCCCTCAGGCGCAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCCGC 2841026
Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001
||| || | | || || | ||||| ||||||||||| | | ||| ||||| | ||
Sbjct 2841025 CAAAGTCCTACCATCTTCTAGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGATCCGGGGG 2840966
Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCG 43059
| ||||| || || |||| | | ||||||| || | | ||||| ||| |||
Sbjct 2840965 AATGCCTTCCTTGTC-CTGAATTTTCGCTTTGACGTTGTCGATGGTGTCAG-AGCTCTCA 2840908
Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
|| || | || || ||||| || || || || ||||||||||||||||||
Sbjct 2840907 ACTTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTCACAAAAATTTGCATT 2840857
>seq652
Length=2384379
Score = 87.8 bits (96), Expect = 1e-12
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | | ||| | ||| | ||| ||||||||| | |||||||| | |
Sbjct 465512 CCACCACGGAGGCGAAGCACAAGATGTAGAGTTGACTCCTTTTGGATGTTGTAATCCGCC 465453
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||| || | || || | || || || ||||||||||| | ||| ||||| | ||
Sbjct 465452 AGTGTCCGGCCATCCTCGAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGATCTGGGGGA 465393
Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060
| ||||| || || ||| ||| ||||||| | |||| || || | ||| |||||
Sbjct 465392 ATGCCTTCCTTGTC-CTGTATCTTAGCTTTGACATTATCAACGGTATC-CGAGCTCTCGA 465335
Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
| || | ||||| || || ||||| || || || ||||| || |||||
Sbjct 465334 CTTCCAAAGTTATGGTCTTCCCGGTAAGGGTCTTGACAAATATCTGCAT 465286
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941
||| |||||||| | | ||||| || | ||| ||| || || | || |||||||
Sbjct 465741 GCCACCACGCAGACGAAGGACCAAGTGCAGAGTTGACTCTTTCTGGATGTTATAATCGGC 465682
Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001
|| ||| | | |||| |||| ||| || ||||||||||||| | ||| || || | ||
Sbjct 465681 CAGTGTCCTTCCGTCTTCCAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCTGGAGG 465622
Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| || || || || |||| | || || || | | ||||| | ||| ||
Sbjct 465621 GATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCTGAACTCTCCAC 465562
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
|| | || || || |||||||| ||||| || |||||||| ||||||
Sbjct 465561 CTCCAGAGTGATGGTCTTTCCGGTCAGAGTCTTGACAAAAATCTGCATT 465513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381200526461808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |