Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq12 89.7 7e-13
>seq12
Length=4956709
Score = 89.7 bits (98), Expect = 7e-13
Identities = 166/241 (69%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 72405 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 72464
|||| | ||| ||||| ||||| || | ||| || ||||| || || |||||| |
Sbjct 4012306 TTGGGGCCGAGGTGTTCCTGCATTGAACAGGGTGGGGGAAGCATGAGTGAACCATCGCTG 4012365
Query 72465 AGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCG 72523
||||| | || || || | || || || || || || | ||| || ||||| || |
Sbjct 4012366 AGACATCATATGATATGTTTTGATGGCAGAGTCGATGTCATCCTTG-TGAATTCCAACAG 4012424
Query 72524 CGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 72583
| || | ||| ||||| |||||||||||||| || | ||| | | |||| | ||
Sbjct 4012425 CAACCCTCATCAACATGTGCTGAGGTCTTTCCACAACCTTCCCTTGGACCTTCAGAAGGT 4012484
Query 72584 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 72643
| || | || | |||||||||||||| |||| ||| ||| ||||| || || || |
Sbjct 4012485 AAGACCTCTCGAGTGTTTTAAAACCAAAGTAGTCGTAATCAAAATCTCGGTCATAGATTA 4012544
Query 72644 T 72644
|
Sbjct 4012545 T 4012545
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670834033005760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |