Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq49 96.9 4e-15
seq203 95.1 1e-14
>seq49
Length=4798478
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| |||| | ||| | || ||||||| || ||||| ||||| |||||||||||
Sbjct 2846207 GCCACCTCTCAGACGAAGCACCAAATGAAGGGTGGATTCCTTTTGGATGTTGTAATCAGC 2846148
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
|| |||| | || ||||| || || |||||| |||| || | ||||| || |||||
Sbjct 2846147 CAGGGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGG 2846088
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| || |||||||| ||| || || | | || | |||||||| | ||| ||
Sbjct 2846087 GATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTATCAATCGTGTCCGAGCTTTCAAC 2846028
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | ||||||||||| | || || || || || |||||
Sbjct 2846027 CTCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 2845980
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
|||||| | | ||||| ||| || |||| || || ||||| || ||||| |||||
Sbjct 2870141 GCCTCCCCTCAGACGCAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGC 2870082
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
|| || || ||||| || ||||| |||||| | || || | |||||||| || ||
Sbjct 2870081 CAGAGTCCTACCATCTTCTAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGG 2870022
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|||||||||||||| ||||||| ||| | | || | ||||| | | || ||
Sbjct 2870021 AATGCCTTCTTTGTCCTGAATTTTTGCTTTGACATTGTCGATAGTGTCAGAGCTCTCAAC 2869962
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||| | ||| | || || || || | || || || || ||||||||
Sbjct 2869961 TTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTGACAAAGATTTGCAT 2869914
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034
||| || || | || ||||| ||||| ||||||||||| || |||| | || ||
Sbjct 2840383 AACCAAGTGTAGGGTTGATTCCTTTTGGATGTTGTAATCAGCCAGGGTGCGCCCATCCTC 2840324
Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094
||| || || |||||| |||| || | ||||| || ||||| || || || |||||
Sbjct 2840323 GAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTG 2840264
Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154
||| || || | | || |||||||||| | ||| || || | || | |||||
Sbjct 2840263 AATCTTGGCCTTGACATTATCAACCGTGTCCGAGCTTTCAACCTCGAGGGTAATGGTCTT 2840204
Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||||| | || || || || || |||||
Sbjct 2840203 GCCGGTGAGGGTCTTCACAAAGATCTGCAT 2840174
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029
|||| ||| || |||| || || || || || ||||||||||| || || ||
Sbjct 2847060 CGCAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCTACCA 2847001
Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089
||||| || ||||| |||||| | || || | |||||||| || || |||||||| |||
Sbjct 2847000 TCTTCTAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTG 2846941
Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149
|| ||||||| ||| | | || | ||||| | | || ||||| | ||| |
Sbjct 2846940 TCCTGAATTTTTGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCAACTTCCAAAGTGATT 2846881
Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| || || || | || || || || ||||||||
Sbjct 2846880 GTTTTCCCAGTAAGGGTCTTCACAAAAATTTGCAT 2846846
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034
||| || || | || ||||| || || ||||||||||| || |||| | || ||
Sbjct 2869667 AACCAAGTGTAGGGTTGATTCCTTCTGGATGTTGTAATCAGCCAGGGTGCGCCCATCCTC 2869608
Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094
||| || || |||||| |||| || | ||||| || ||||| || || || |||||
Sbjct 2869607 GAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTG 2869548
Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154
||| || || | | || |||||||||| | ||| || |||| || | |||||
Sbjct 2869547 AATCTTGGCCTTGACATTATCAACCGTGTCCGAGCTTTCAACCTCAAGGGTAATGGTCTT 2869488
Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||||| | || || || || || |||||
Sbjct 2869487 GCCGGTGAGGGTCTTCACAAAGATCTGCAT 2869458
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
|||||| | | |||| ||| || |||| || || ||||| || |||||||||||
Sbjct 2841085 GCCTCCCCTCAGGCGCAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCCGC 2841026
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
|| || || ||||| || ||||| || ||| | || || | |||||||| || ||
Sbjct 2841025 CAAAGTCCTACCATCTTCTAGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGATCCGGGGG 2840966
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|||||||| ||||| |||||| ||| | | || | ||||| | | || ||
Sbjct 2840965 AATGCCTTCCTTGTCCTGAATTTTCGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCAAC 2840906
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||| | ||| | || || || || | || || || || ||||||||
Sbjct 2840905 TTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTCACAAAAATTTGCAT 2840858
>seq203
Length=8626763
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| ||||| ||||| || ||||| ||| || ||| || ||||| |||||||||||
Sbjct 5730810 GTCGATTCCTTTTGGATATTGTAGTCGGCCAGTGTCCTGCCATCTTCAAGTTGTTTACCC 5730751
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
||| ||||||| | |||||| || ||||| || || |||||||| |||||| ||
Sbjct 5730750 GCAAAGATCAGCCTTTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGAATTTTAGCCTTC 5730691
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | ||||| | | ||| || || | ||| | ||||| || || | ||
Sbjct 5730690 ACATTGTCGATGGTGTCGGAGCTTTCGACCTCGAGAGTAATTGTCTTCCCAGTAAGAGTC 5730631
Query 143168 TTTACGAATATTTGCAT 143184
|| ||||| || |||||
Sbjct 5730630 TTCACGAAAATCTGCAT 5730614
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506783860552320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |