Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq49 96.9 4e-15 seq203 95.1 1e-14 >seq49 Length=4798478 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| | ||| | || ||||||| || ||||| ||||| ||||||||||| Sbjct 2846207 GCCACCTCTCAGACGAAGCACCAAATGAAGGGTGGATTCCTTTTGGATGTTGTAATCAGC 2846148 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| | || ||||| || || |||||| |||| || | ||||| || ||||| Sbjct 2846147 CAGGGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGG 2846088 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| ||| || || | | || | |||||||| | ||| || Sbjct 2846087 GATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTATCAATCGTGTCCGAGCTTTCAAC 2846028 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||| | || || || || || ||||| Sbjct 2846027 CTCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 2845980 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | | ||||| ||| || |||| || || ||||| || ||||| ||||| Sbjct 2870141 GCCTCCCCTCAGACGCAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGC 2870082 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || || ||||| || ||||| |||||| | || || | |||||||| || || Sbjct 2870081 CAGAGTCCTACCATCTTCTAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGG 2870022 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| ||||||| ||| | | || | ||||| | | || || Sbjct 2870021 AATGCCTTCTTTGTCCTGAATTTTTGCTTTGACATTGTCGATAGTGTCAGAGCTCTCAAC 2869962 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | || || || || | || || || || |||||||| Sbjct 2869961 TTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTGACAAAGATTTGCAT 2869914 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || || | || ||||| ||||| ||||||||||| || |||| | || || Sbjct 2840383 AACCAAGTGTAGGGTTGATTCCTTTTGGATGTTGTAATCAGCCAGGGTGCGCCCATCCTC 2840324 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||| || || |||||| |||| || | ||||| || ||||| || || || ||||| Sbjct 2840323 GAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTG 2840264 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| || || | | || |||||||||| | ||| || || | || | ||||| Sbjct 2840263 AATCTTGGCCTTGACATTATCAACCGTGTCCGAGCTTTCAACCTCGAGGGTAATGGTCTT 2840204 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| | || || || || || ||||| Sbjct 2840203 GCCGGTGAGGGTCTTCACAAAGATCTGCAT 2840174 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| ||| || |||| || || || || || ||||||||||| || || || Sbjct 2847060 CGCAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCTACCA 2847001 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || ||||| |||||| | || || | |||||||| || || |||||||| ||| Sbjct 2847000 TCTTCTAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTG 2846941 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||||||| ||| | | || | ||||| | | || ||||| | ||| | Sbjct 2846940 TCCTGAATTTTTGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCAACTTCCAAAGTGATT 2846881 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || || | || || || || |||||||| Sbjct 2846880 GTTTTCCCAGTAAGGGTCTTCACAAAAATTTGCAT 2846846 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || || | || ||||| || || ||||||||||| || |||| | || || Sbjct 2869667 AACCAAGTGTAGGGTTGATTCCTTCTGGATGTTGTAATCAGCCAGGGTGCGCCCATCCTC 2869608 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||| || || |||||| |||| || | ||||| || ||||| || || || ||||| Sbjct 2869607 GAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTG 2869548 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| || || | | || |||||||||| | ||| || |||| || | ||||| Sbjct 2869547 AATCTTGGCCTTGACATTATCAACCGTGTCCGAGCTTTCAACCTCAAGGGTAATGGTCTT 2869488 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| | || || || || || ||||| Sbjct 2869487 GCCGGTGAGGGTCTTCACAAAGATCTGCAT 2869458 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | | |||| ||| || |||| || || ||||| || ||||||||||| Sbjct 2841085 GCCTCCCCTCAGGCGCAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCCGC 2841026 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || || ||||| || ||||| || ||| | || || | |||||||| || || Sbjct 2841025 CAAAGTCCTACCATCTTCTAGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGATCCGGGGG 2840966 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| |||||| ||| | | || | ||||| | | || || Sbjct 2840965 AATGCCTTCCTTGTCCTGAATTTTCGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCAAC 2840906 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | || || || || | || || || || |||||||| Sbjct 2840905 TTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTCACAAAAATTTGCAT 2840858 >seq203 Length=8626763 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| || ||||| ||| || ||| || ||||| ||||||||||| Sbjct 5730810 GTCGATTCCTTTTGGATATTGTAGTCGGCCAGTGTCCTGCCATCTTCAAGTTGTTTACCC 5730751 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | |||||| || ||||| || || |||||||| |||||| || Sbjct 5730750 GCAAAGATCAGCCTTTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGAATTTTAGCCTTC 5730691 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | ||| || || | ||| | ||||| || || | || Sbjct 5730690 ACATTGTCGATGGTGTCGGAGCTTTCGACCTCGAGAGTAATTGTCTTCCCAGTAAGAGTC 5730631 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 5730630 TTCACGAAAATCTGCAT 5730614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506783860552320