Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq161 172 8e-38 >seq161 Length=5110746 Score = 172 bits (190), Expect = 8e-38 Identities = 585/885 (66%), Gaps = 35/885 (4%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| ||| | | || ||||| |||||||| ||||| |||||||||| | Sbjct 1383825 TGTTCCCTATCCAGTACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCT 1383884 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| ||||| || || ||| ||||||| | ||||| | | | || | Sbjct 1383885 GGACCGCCGAGGAGGTTGACCTCTCCCAGGACCTCCGTCACTGGGACTCCC---TCACCG 1383941 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||||| | || | | ||||| | |||||||| |||| |||||| || |||| Sbjct 1383942 ACGACGAGCGCCACTTCGTCACCCACATCCTCGCCTTCTTCGCCGCCTCCGACGGCATCG 1384001 Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTG-ACCATTCCAGAGGTGTCGTG 125233 || ||| || || | | | || ||| | ||| | | | ||| |||| || | Sbjct 1384002 TCCTCGAGAACCTCGCCGTC-CGCTTCATGAAGGAGGTCCAGCTCTCC-GAGGCC-CGCG 1384058 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||| ||||| ||| || |||||| | ||||| || |||||| || Sbjct 1384059 CCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCC 1384118 Query 125293 TTGACATGTACATTCGCGA-TCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACG 125351 | || | ||| | || ||||| | || || ||||| ||| ||||||| Sbjct 1384119 TCGAGACCTACGTCAAGGACTCCGCCGAG-AAGGACCGCCTCTTCCGCGCGGTCGACACC 1384177 Query 125352 GT----GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA 125407 || |||||| | || || ||| | |||| | || ||| |||| | || | | Sbjct 1384178 GTCCCCGCCGTCGCT-CGCAA---GGCGGACTGGGCCCTCCGCTGGGTCGACGGCGCCGA 1384233 Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||| | |||||| | || | || |||||| ||| |||||||||||||| || || Sbjct 1384234 GTCCTT---CGCCGAGCGCCTCCTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGG 1384290 Query 125468 TAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 ||||| ||| |||||||| ||||||||||||||||| |||||||| || || || | Sbjct 1384291 CAGTTTCTGC-GCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCT 1384349 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTC 125586 |||||| | || || || ||||||||||| ||||| ||||| ||| | | ||| | Sbjct 1384350 CGAACGAGCTCATCTCCCGGGACGAGGGCCTCCACTGCGACTTCGCC-TGC--CTG---C 1384403 Query 125587 GCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCG 125646 | ||| |||| | ||| | || | ||||| || ||| || || || Sbjct 1384404 TCTACTCGCTGC-TGAAGAG-GAAG-CCGAGCGAGGAGCGGGTGCGGGGGATCGTGCGCG 1384460 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706 | |||||| || || ||||| | ||| | || ||| | | || | || | Sbjct 1384461 AGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCGTGCGCCCTGGTGGGGA 1384520 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG-AG 125765 ||||| | | || ||| || ||||||| ||||| || || || ||||| || || Sbjct 1384521 TGAACCGGGACCTCATGGGCCAGTACATCGAGTTCGTCGCCGACCGTCTCCTCGGCGCCC 1384580 Query 125766 TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825 | || | | | ||||| |||| || | ||| ||||| || | ||| ||| || Sbjct 1384581 TCGACT-ACGGGAAGATGTACAGCGTCCCGAACCCCTTCGACTGGATGGAGCTCATCTCG 1384639 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || |||| ||||||||||| ||||||||| |||| | |||||| Sbjct 1384640 CTGCAGGGGAAGACCAACTTCTTCGAGAAGCGGGTCGGGGAGTAC 1384684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740722240381760