Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq161 172 8e-38
>seq161
Length=5110746
Score = 172 bits (190), Expect = 8e-38
Identities = 585/885 (66%), Gaps = 35/885 (4%)
Strand=Plus/Plus
Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055
|||| || ||| ||| | | || ||||| |||||||| ||||| |||||||||| |
Sbjct 1383825 TGTTCCCTATCCAGTACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCT 1383884
Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115
|||| | ||| ||||| || || ||| ||||||| | ||||| | | | || |
Sbjct 1383885 GGACCGCCGAGGAGGTTGACCTCTCCCAGGACCTCCGTCACTGGGACTCCC---TCACCG 1383941
Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175
| ||||| | || | | ||||| | |||||||| |||| |||||| || ||||
Sbjct 1383942 ACGACGAGCGCCACTTCGTCACCCACATCCTCGCCTTCTTCGCCGCCTCCGACGGCATCG 1384001
Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTG-ACCATTCCAGAGGTGTCGTG 125233
|| ||| || || | | | || ||| | ||| | | | ||| |||| || |
Sbjct 1384002 TCCTCGAGAACCTCGCCGTC-CGCTTCATGAAGGAGGTCCAGCTCTCC-GAGGCC-CGCG 1384058
Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292
| || ||||| ||||| ||| || |||||| | ||||| || |||||| ||
Sbjct 1384059 CCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCC 1384118
Query 125293 TTGACATGTACATTCGCGA-TCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACG 125351
| || | ||| | || ||||| | || || ||||| ||| |||||||
Sbjct 1384119 TCGAGACCTACGTCAAGGACTCCGCCGAG-AAGGACCGCCTCTTCCGCGCGGTCGACACC 1384177
Query 125352 GT----GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA 125407
|| |||||| | || || ||| | |||| | || ||| |||| | || | |
Sbjct 1384178 GTCCCCGCCGTCGCT-CGCAA---GGCGGACTGGGCCCTCCGCTGGGTCGACGGCGCCGA 1384233
Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467
||| | |||||| | || | || |||||| ||| |||||||||||||| || ||
Sbjct 1384234 GTCCTT---CGCCGAGCGCCTCCTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGG 1384290
Query 125468 TAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526
||||| ||| |||||||| ||||||||||||||||| |||||||| || || || |
Sbjct 1384291 CAGTTTCTGC-GCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCT 1384349
Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTC 125586
|||||| | || || || ||||||||||| ||||| ||||| ||| | | ||| |
Sbjct 1384350 CGAACGAGCTCATCTCCCGGGACGAGGGCCTCCACTGCGACTTCGCC-TGC--CTG---C 1384403
Query 125587 GCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCG 125646
| ||| |||| | ||| | || | ||||| || ||| || || ||
Sbjct 1384404 TCTACTCGCTGC-TGAAGAG-GAAG-CCGAGCGAGGAGCGGGTGCGGGGGATCGTGCGCG 1384460
Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706
| |||||| || || ||||| | ||| | || ||| | | || | || |
Sbjct 1384461 AGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCGTGCGCCCTGGTGGGGA 1384520
Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG-AG 125765
||||| | | || ||| || ||||||| ||||| || || || ||||| || ||
Sbjct 1384521 TGAACCGGGACCTCATGGGCCAGTACATCGAGTTCGTCGCCGACCGTCTCCTCGGCGCCC 1384580
Query 125766 TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825
| || | | | ||||| |||| || | ||| ||||| || | ||| ||| ||
Sbjct 1384581 TCGACT-ACGGGAAGATGTACAGCGTCCCGAACCCCTTCGACTGGATGGAGCTCATCTCG 1384639
Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870
|| |||| ||||||||||| ||||||||| |||| | ||||||
Sbjct 1384640 CTGCAGGGGAAGACCAACTTCTTCGAGAAGCGGGTCGGGGAGTAC 1384684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740722240381760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |