Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq49 116 3e-21
seq652 84.2 2e-11
>seq49
Length=4798478
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| |||||||| | | || || ||||||||||| || ||||| |||||||| || |
Sbjct 2869912 CCTCCTCTCAAACGGAGGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGCT 2869853
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | | || || | ||| || ||||| | ||||| || || ||||| |||
Sbjct 2869852 AGTGTCCGGCCATCCTCGAGTTGCTTTCCAGCAAAAATCAACCGCTGCTGGTCTGGGGGA 2869793
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||||||||| |||||| ||| ||| | || ||||||||| | | || ||
Sbjct 2869792 ATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCGGAACTCTCCACC 2869733
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| | |||||||| || || || ||||| || ||||| || |||||
Sbjct 2869732 TCAAGAGTAATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 2869686
Score = 98.7 bits (108), Expect = 7e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
|||||||||||| | | || |||||||||||||| || ||||| |||||||||||
Sbjct 2846208 TGCCACCTCTCAGACGAAGCACCAAATGAAGGGTGGATTCCTTTTGGATGTTGTAATCAG 2846149
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | | | | || || | || |||||||| | || | | || ||||| |
Sbjct 2846148 CCAGGGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAG 2846089
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
| ||||| |||||||| ||| ||| ||| ||| | || || || || |||| |
Sbjct 2846088 GGATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTATCAATCGTGTCCGAGCTTTCAA 2846029
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || | ||||||||| || || || || || || ||||| || |||||
Sbjct 2846028 CCTCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 2845980
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || ||||||||||| || ||||| |||||||| || || | || | || ||
Sbjct 2840838 ACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCAAGCGTCCTGCCATCCTCG 2840779
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || |||||||| | ||||| || || ||||| || || |||||||||||
Sbjct 2840778 AGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCTGGGGGGATCCCTTCTTTGTCCTGG 2840719
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| ||| ||| | || ||||||||| | | || || || | ||||| || ||
Sbjct 2840718 ATTTTAGCCTTCACATTGTCAATGGTATCGGAACTCTCGACCTCCAGAGTAATTGTCTTG 2840659
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || ||||| || |||||
Sbjct 2840658 CCAGTGAGGGTCTTCACAAAGATCTGCAT 2840630
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
|||| || |||| | | ||| || ||||| ||||| ||||| || |||||||||||
Sbjct 2841086 TGCCTCCCCTCAGGCGCAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCCG 2841027
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
| | | || | ||||||| ||||| || || | || | | || || || |
Sbjct 2841026 CCAAAGTCCTACCATCTTCTAGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGATCCGGGG 2840967
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTT-ACAATTTCTATGGTATCGCTATTTTCT 15313
|||| ||||| ||||| |||||| | |||| || | || ||||| || | ||
Sbjct 2840966 GAATGCCTTCCTTGTCCTGAATTTT-CGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCA 2840908
Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || ||||| || || || || || ||||||||||||||
Sbjct 2840907 ACTTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTCACAAAAATTTGCAT 2840858
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
||||||| || | | | ||| || || ||||| || || || || |||||||||||
Sbjct 2869458 TGCCACCCCTGAGGCGAAGAACCAAGTGTAGGGTTGATTCCTTCTGGATGTTGTAATCAG 2869399
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
| | | | | | || || | || |||||||| | || | | ||| ||||| |
Sbjct 2869398 CCAAAGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCAGGAG 2869339
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
| ||||| || ||||| ||| ||| ||||||| | || || || || | | || |
Sbjct 2869338 GGATTCCCTCCTTGTCTTGAATCTTGGCCTTTACATTGTCGATTGTGTCTGAACTCTCAA 2869279
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || | ||| ||||| || || || |||||||| ||||| || |||||
Sbjct 2869278 CCTCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCAT 2869230
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
|||| || |||| | | ||| || ||||| || || ||||| || ||||| |||||
Sbjct 2870142 TGCCTCCCCTCAGACGCAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTG 2870083
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
||| | || | ||||||| ||||| ||||| | || | | || || || |
Sbjct 2870082 CCAGAGTCCTACCATCTTCTAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGG 2870023
Query 15255 GAATTCCTTCTTTGT-CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313
|||| |||||||||| | || ||||||| || ||| | || || || || | ||
Sbjct 2870022 GAATGCCTTCTTTGTCCTGAATTTTTGCT-TTGACATTGTCGATAGTGTCAGAGCTCTCA 2869964
Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || ||||| || || || || || ||||| ||||||||
Sbjct 2869963 ACTTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTGACAAAGATTTGCAT 2869914
>seq652
Length=2384379
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || ||||||||||| || ||||| |||||||| || || | || | || ||
Sbjct 465038 ACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCTGCGAGCGTCCTGCCATCCTCG 464979
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| ||| |||||||| | ||||| | || ||||| || ||||| || |||||
Sbjct 464978 AGTTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 464919
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| ||| || | || || || || | |||| || || | ||| ||||| ||
Sbjct 464918 ATTTTCGCCTTCACGTTATCGATAGTGTCCGAACTTTCGACCTCGAGGGTTATGGTCTTG 464859
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || ||||| ||||||||
Sbjct 464858 CCAGTGAGGGTCTTCACAAAGATTTGCAT 464830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362018634189816
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