Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq49 116 3e-21 seq652 84.2 2e-11 >seq49 Length=4798478 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | | || || ||||||||||| || ||||| |||||||| || | Sbjct 2869912 CCTCCTCTCAAACGGAGGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGCT 2869853 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || | ||| || ||||| | ||||| || || ||||| ||| Sbjct 2869852 AGTGTCCGGCCATCCTCGAGTTGCTTTCCAGCAAAAATCAACCGCTGCTGGTCTGGGGGA 2869793 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| |||||| ||| ||| | || ||||||||| | | || || Sbjct 2869792 ATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCGGAACTCTCCACC 2869733 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | |||||||| || || || ||||| || ||||| || ||||| Sbjct 2869732 TCAAGAGTAATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 2869686 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| | | || |||||||||||||| || ||||| ||||||||||| Sbjct 2846208 TGCCACCTCTCAGACGAAGCACCAAATGAAGGGTGGATTCCTTTTGGATGTTGTAATCAG 2846149 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | | || || | || |||||||| | || | | || ||||| | Sbjct 2846148 CCAGGGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAG 2846089 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | ||||| |||||||| ||| ||| ||| ||| | || || || || |||| | Sbjct 2846088 GGATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTATCAATCGTGTCCGAGCTTTCAA 2846029 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||||||||| || || || || || || ||||| || ||||| Sbjct 2846028 CCTCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 2845980 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || ||||| |||||||| || || | || | || || Sbjct 2840838 ACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCAAGCGTCCTGCCATCCTCG 2840779 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || |||||||| | ||||| || || ||||| || || ||||||||||| Sbjct 2840778 AGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCTGGGGGGATCCCTTCTTTGTCCTGG 2840719 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| | || ||||||||| | | || || || | ||||| || || Sbjct 2840718 ATTTTAGCCTTCACATTGTCAATGGTATCGGAACTCTCGACCTCCAGAGTAATTGTCTTG 2840659 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| || ||||| Sbjct 2840658 CCAGTGAGGGTCTTCACAAAGATCTGCAT 2840630 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| || |||| | | ||| || ||||| ||||| ||||| || ||||||||||| Sbjct 2841086 TGCCTCCCCTCAGGCGCAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCCG 2841027 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | | || | ||||||| ||||| || || | || | | || || || | Sbjct 2841026 CCAAAGTCCTACCATCTTCTAGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGATCCGGGG 2840967 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTT-ACAATTTCTATGGTATCGCTATTTTCT 15313 |||| ||||| ||||| |||||| | |||| || | || ||||| || | || Sbjct 2840966 GAATGCCTTCCTTGTCCTGAATTTT-CGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCA 2840908 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| || || || || || |||||||||||||| Sbjct 2840907 ACTTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTCACAAAAATTTGCAT 2840858 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| || | | | ||| || || ||||| || || || || ||||||||||| Sbjct 2869458 TGCCACCCCTGAGGCGAAGAACCAAGTGTAGGGTTGATTCCTTCTGGATGTTGTAATCAG 2869399 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | | | | | || || | || |||||||| | || | | ||| ||||| | Sbjct 2869398 CCAAAGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCAGGAG 2869339 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | ||||| || ||||| ||| ||| ||||||| | || || || || | | || | Sbjct 2869338 GGATTCCCTCCTTGTCTTGAATCTTGGCCTTTACATTGTCGATTGTGTCTGAACTCTCAA 2869279 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||| ||||| || || || |||||||| ||||| || ||||| Sbjct 2869278 CCTCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCAT 2869230 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| || |||| | | ||| || ||||| || || ||||| || ||||| ||||| Sbjct 2870142 TGCCTCCCCTCAGACGCAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTG 2870083 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | || | ||||||| ||||| ||||| | || | | || || || | Sbjct 2870082 CCAGAGTCCTACCATCTTCTAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGG 2870023 Query 15255 GAATTCCTTCTTTGT-CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| |||||||||| | || ||||||| || ||| | || || || || | || Sbjct 2870022 GAATGCCTTCTTTGTCCTGAATTTTTGCT-TTGACATTGTCGATAGTGTCAGAGCTCTCA 2869964 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| || || || || || ||||| |||||||| Sbjct 2869963 ACTTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTGACAAAGATTTGCAT 2869914 >seq652 Length=2384379 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || ||||| |||||||| || || | || | || || Sbjct 465038 ACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCTGCGAGCGTCCTGCCATCCTCG 464979 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| |||||||| | ||||| | || ||||| || ||||| || ||||| Sbjct 464978 AGTTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 464919 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || | || || || || | |||| || || | ||| ||||| || Sbjct 464918 ATTTTCGCCTTCACGTTATCGATAGTGTCCGAACTTTCGACCTCGAGGGTTATGGTCTTG 464859 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| |||||||| Sbjct 464858 CCAGTGAGGGTCTTCACAAAGATTTGCAT 464830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362018634189816