Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq49 104 2e-17 seq203 91.5 1e-13 seq652 84.2 2e-11 >seq49 Length=4798478 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || ||||| || || || ||||||||||||| || | | || || Sbjct 2841066 ACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATCTTCT 2841007 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| ||||||| |||||||||||| ||| | ||| || ||||| | Sbjct 2841006 AGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGA 2840947 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 |||||| ||| || | | ||| || || ||| ||| | || || ||||| Sbjct 2840946 ATTTTCGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCAACTTCCAAAGTGATTGTTTTC 2840887 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || || ||||||||||||||| Sbjct 2840886 CCAGTAAGGGTCTTCACAAAAATTTGCATT 2840857 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || |||||||| || || ||||||||||||| || | | || || Sbjct 2847054 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATCTTCT 2846995 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| ||||||| |||||||||||| ||| | ||| || ||||| | Sbjct 2846994 AGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGA 2846935 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| ||| || | | ||| || || ||| ||| | || || ||||| Sbjct 2846934 ATTTTTGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCAACTTCCAAAGTGATTGTTTTC 2846875 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || || ||||||||||||||| Sbjct 2846874 CCAGTAAGGGTCTTCACAAAAATTTGCATT 2846845 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || ||||| || || || || ||||| |||| || | | || || Sbjct 2870122 ACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCTTCT 2870063 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| ||||||| |||||||||||| ||| | ||| |||||||| | Sbjct 2870062 AGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCTTTGTCCTGA 2870003 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| ||| || | | ||| ||| || ||| ||| | || || ||||| Sbjct 2870002 ATTTTTGCTTTGACATTGTCGATAGTGTCAGAGCTCTCAACTTCCAAAGTGATTGTTTTC 2869943 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || |||||||| ||||||||| Sbjct 2869942 CCAGTAAGGGTCTTGACAAAGATTTGCATT 2869913 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 18844 CGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACC 18903 ||| ||||||||||||||||||||||| |||| ||| | | ||||| |||||||| || Sbjct 2841283 CGTCGACTCCTTTTGAATATTGTAATCGGCCAGTGTCCGGCCATCCTCGAGCTGTTTCCC 2841224 Query 18904 CGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 ||| |||| | | |||||| || ||| | ||| || ||||| Sbjct 2841223 TGCAAAAATCAACCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 2841179 >seq203 Length=8626763 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| ||||| || ||||| |||| ||| | | || || Sbjct 5730139 CACCAAGTGGAGGGTAGACTCCTTCTGAATGTTATAATCGGCCAAGGTTCGGCCATCTTC 5730080 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | ||||| |||||||| ||| || | || || ||||| Sbjct 5730079 AAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTG 5730020 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| |||||| | ||| || ||| ||| || | ||| || || || Sbjct 5730019 AATTTTTGCTTTTACATTATCGATTGTGTCGGAGCTTTCCACCTCAAGGGTGATTGTCTT 5729960 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATC 19049 || || | ||||| ||||| |||||||| | ||||| Sbjct 5729959 GCCCGTAAGGGTTTTCACAAAGATTTGCATCTGAAATC 5729922 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || |||||||| |||||||| || |||| ||| || | || || || ||||||||| Sbjct 5730810 GTCGATTCCTTTTGGATATTGTAGTCGGCCAGTGTCCTGCCATCTTCAAGTTGTTTACCC 5730751 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || || ||||| ||| || | ||||||||||| |||||| || Sbjct 5730750 GCAAAGATCAGCCTTTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGAATTTTAGCCTTC 5730691 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | ||| || ||| || | || |||| ||||| || || || || | ||| Sbjct 5730690 ACATTGTCGATGGTGTCG-GAGCTTTCGACCTCGAGAGTAATTGTCTTCCCAGTAAGAGT 5730632 Query 19024 TTTGACAAAAATTTGCAT 19041 || || ||||| ||||| Sbjct 5730631 CTTCACGAAAATCTGCAT 5730614 >seq652 Length=2384379 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||| || ||||||||||||| ||| | | ||||| ||||| || || Sbjct 465482 GTTGACTCCTTTTGGATGTTGTAATCCGCCAGTGTCCGGCCATCCTCGAGCTGCTTCCCA 465423 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | ||||||||||| ||| | ||| || ||||| || || ||| Sbjct 465422 GCAAAAATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGTATCTTAGCTTTG 465363 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | || ||||| | || ||| ||| | || ||||| || || || | || Sbjct 465362 ACATTATCAACGGTATC-CGAGCTCTCGACTTCCAAAGTTATGGTCTTCCCGGTAAGGGT 465304 Query 19024 TTTGACAAAAATTTGCAT 19041 |||||||| || ||||| Sbjct 465303 CTTGACAAATATCTGCAT 465286 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| || ||||| || || || || ||||| |||| ||| | |||| ||| Sbjct 465722 ACCAAGTGCAGAGTTGACTCTTTCTGGATGTTATAATCGGCCAGTGTCCTTCCGTCTTCC 465663 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || || || || ||| |||| || |||||||| || || | |||||| ||||| Sbjct 465662 AGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGG 465603 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | ||| || || | |||| || | || ||||| || Sbjct 465602 ATCTTTGCCTTCACATTGTCGATGGTGTCTGAACTCTCCACCTCCAGAGTGATGGTCTTT 465543 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | ||| ||||||||||| |||||| Sbjct 465542 CCGGTCAGAGTCTTGACAAAAATCTGCATT 465513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414389006404144