Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq49 104 2e-17
seq203 91.5 1e-13
seq652 84.2 2e-11
>seq49
Length=4798478
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||| | || ||||| || || || ||||||||||||| || | | || ||
Sbjct 2841066 ACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATCTTCT 2841007
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
|||||||| || ||| ||||||| |||||||||||| ||| | ||| || ||||| |
Sbjct 2841006 AGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGA 2840947
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012
|||||| ||| || | | ||| || || ||| ||| | || || |||||
Sbjct 2840946 ATTTTCGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCAACTTCCAAAGTGATTGTTTTC 2840887
Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| || | || || |||||||||||||||
Sbjct 2840886 CCAGTAAGGGTCTTCACAAAAATTTGCATT 2840857
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||| | || |||||||| || || ||||||||||||| || | | || ||
Sbjct 2847054 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATCTTCT 2846995
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
|||||||| || ||| ||||||| |||||||||||| ||| | ||| || ||||| |
Sbjct 2846994 AGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGA 2846935
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012
||||| ||| || | | ||| || || ||| ||| | || || |||||
Sbjct 2846934 ATTTTTGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCAACTTCCAAAGTGATTGTTTTC 2846875
Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| || | || || |||||||||||||||
Sbjct 2846874 CCAGTAAGGGTCTTCACAAAAATTTGCATT 2846845
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||| | || ||||| || || || || ||||| |||| || | | || ||
Sbjct 2870122 ACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCTTCT 2870063
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
|||||||| || ||| ||||||| |||||||||||| ||| | ||| |||||||| |
Sbjct 2870062 AGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCTTTGTCCTGA 2870003
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012
||||| ||| || | | ||| ||| || ||| ||| | || || |||||
Sbjct 2870002 ATTTTTGCTTTGACATTGTCGATAGTGTCAGAGCTCTCAACTTCCAAAGTGATTGTTTTC 2869943
Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| || | || |||||||| |||||||||
Sbjct 2869942 CCAGTAAGGGTCTTGACAAAGATTTGCATT 2869913
Score = 82.4 bits (90), Expect = 6e-11
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 18844 CGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACC 18903
||| ||||||||||||||||||||||| |||| ||| | | ||||| |||||||| ||
Sbjct 2841283 CGTCGACTCCTTTTGAATATTGTAATCGGCCAGTGTCCGGCCATCCTCGAGCTGTTTCCC 2841224
Query 18904 CGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948
||| |||| | | |||||| || ||| | ||| || |||||
Sbjct 2841223 TGCAAAAATCAACCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 2841179
>seq203
Length=8626763
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | ||||||||||| ||||| || ||||| |||| ||| | | || ||
Sbjct 5730139 CACCAAGTGGAGGGTAGACTCCTTCTGAATGTTATAATCGGCCAAGGTTCGGCCATCTTC 5730080
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||| || || ||| | ||||| |||||||| ||| || | || || |||||
Sbjct 5730079 AAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTG 5730020
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|||||| |||||| | ||| || ||| ||| || | ||| || || ||
Sbjct 5730019 AATTTTTGCTTTTACATTATCGATTGTGTCGGAGCTTTCCACCTCAAGGGTGATTGTCTT 5729960
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATC 19049
|| || | ||||| ||||| |||||||| | |||||
Sbjct 5729959 GCCCGTAAGGGTTTTCACAAAGATTTGCATCTGAAATC 5729922
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| || |||||||| |||||||| || |||| ||| || | || || || |||||||||
Sbjct 5730810 GTCGATTCCTTTTGGATATTGTAGTCGGCCAGTGTCCTGCCATCTTCAAGTTGTTTACCC 5730751
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| | || || || ||||| ||| || | ||||||||||| |||||| ||
Sbjct 5730750 GCAAAGATCAGCCTTTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGAATTTTAGCCTTC 5730691
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023
|| | | ||| || ||| || | || |||| ||||| || || || || | |||
Sbjct 5730690 ACATTGTCGATGGTGTCG-GAGCTTTCGACCTCGAGAGTAATTGTCTTCCCAGTAAGAGT 5730632
Query 19024 TTTGACAAAAATTTGCAT 19041
|| || ||||| |||||
Sbjct 5730631 CTTCACGAAAATCTGCAT 5730614
>seq652
Length=2384379
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| ||||||||||| || ||||||||||||| ||| | | ||||| ||||| || ||
Sbjct 465482 GTTGACTCCTTTTGGATGTTGTAATCCGCCAGTGTCCGGCCATCCTCGAGCTGCTTCCCA 465423
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| |||| | ||||||||||| ||| | ||| || ||||| || || |||
Sbjct 465422 GCAAAAATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGTATCTTAGCTTTG 465363
Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023
|| | | || ||||| | || ||| ||| | || ||||| || || || | ||
Sbjct 465362 ACATTATCAACGGTATC-CGAGCTCTCGACTTCCAAAGTTATGGTCTTCCCGGTAAGGGT 465304
Query 19024 TTTGACAAAAATTTGCAT 19041
|||||||| || |||||
Sbjct 465303 CTTGACAAATATCTGCAT 465286
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||||| || ||||| || || || || ||||| |||| ||| | |||| |||
Sbjct 465722 ACCAAGTGCAGAGTTGACTCTTTCTGGATGTTATAATCGGCCAGTGTCCTTCCGTCTTCC 465663
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
|| || || || ||| |||| || |||||||| || || | |||||| |||||
Sbjct 465662 AGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGG 465603
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012
|| || || || | | ||| || || | |||| || | || ||||| ||
Sbjct 465602 ATCTTTGCCTTCACATTGTCGATGGTGTCTGAACTCTCCACCTCCAGAGTGATGGTCTTT 465543
Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| || | ||| ||||||||||| ||||||
Sbjct 465542 CCGGTCAGAGTCTTGACAAAAATCTGCATT 465513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414389006404144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |