Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq49 96.9 2e-15 >seq49 Length=4798478 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||| | | ||||| || || ||| || ||||| || || || || | Sbjct 2869912 CCTCCTCTCAAACGGAGGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGCT 2869853 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | || |||| || | ||| ||||| ||||| |||||||| |||||||| | || Sbjct 2869852 AGTGTCCGGCCATCCTCGAGTTGCTTTCCAGCAAAAATCAACCGCTGCTGGTCTGGGGGA 2869793 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| || ||||| || || | ||| ||||| | |||||| Sbjct 2869792 ATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCGGAACTCTCCACC 2869733 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | ||||| || || ||||| | |||||||||||| || |||||| Sbjct 2869732 TCAAGAGTAATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATG 2869685 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977 ||| ||||| ||| ||||||||||| |||||| | | || |||| || | || Sbjct 2841289 ATGGAGCGTCGACTCCTTTTGAATATTGTAATCGGCCAGTGTCCGGCCATCCTCGAGCTG 2841230 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 ||| |||||||| |||||||| |||||||| | || | ||||| || || || || Sbjct 2841229 TTTCCCTGCAAAAATCAACCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGTATCTT 2841170 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 |||||| || ||| || || | ||| || || | || || || || || || Sbjct 2841169 CGCTTTGACATTATCAATCGTGTCCGAGCTCTCGACTTCCAAAGTGATAGTCTTGCCAGT 2841110 Query 44098 TAAAGTCTTCACAAATATTTGCATG 44122 | |||||||||||| || |||||| Sbjct 2841109 CAGAGTCTTCACAAAAATCTGCATG 2841085 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||| || || ||| |||||||| || || ||| | | || |||| || Sbjct 2870350 ACCAGATGGAGAGTCGACTCCTTTTGAATGTTGTAGTCGGCCAGTGTCCGGCCATCCTCA 2870291 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||| || ||||| ||||||||||| ||||||||| | || | ||||| ||||| Sbjct 2870290 AGTTGCTTCCCTGCGAATATCAACCGCTGCTGGTCCGGGGGAATGCCTTCCTTATCCTGT 2870231 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||||| || | | || || | |||||| || | || || || || Sbjct 2870230 ATCTTCGACTTGACATTATCGATCGTGTCAGAGCTCTCCACTTCCAAGGTGATAGTCTTG 2870171 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| | ||||||||||| || |||||| Sbjct 2870170 CCGGTAAGGGTCTTCACAAAAATCTGCATG 2870141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354620315559648