Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq49 96.9 2e-15
>seq49
Length=4798478
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954
||||||||||| | | ||||| || || ||| || ||||| || || || || |
Sbjct 2869912 CCTCCTCTCAAACGGAGGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGCT 2869853
Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014
| | || |||| || | ||| ||||| ||||| |||||||| |||||||| | ||
Sbjct 2869852 AGTGTCCGGCCATCCTCGAGTTGCTTTCCAGCAAAAATCAACCGCTGCTGGTCTGGGGGA 2869793
Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074
| |||||||| || ||||| || || | ||| ||||| | ||||||
Sbjct 2869792 ATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCGGAACTCTCCACC 2869733
Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|| | ||||| || || ||||| | |||||||||||| || ||||||
Sbjct 2869732 TCAAGAGTAATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATG 2869685
Score = 86.0 bits (94), Expect = 4e-12
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977
||| ||||| ||| ||||||||||| |||||| | | || |||| || | ||
Sbjct 2841289 ATGGAGCGTCGACTCCTTTTGAATATTGTAATCGGCCAGTGTCCGGCCATCCTCGAGCTG 2841230
Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037
||| |||||||| |||||||| |||||||| | || | ||||| || || || ||
Sbjct 2841229 TTTCCCTGCAAAAATCAACCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGTATCTT 2841170
Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097
|||||| || ||| || || | ||| || || | || || || || || ||
Sbjct 2841169 CGCTTTGACATTATCAATCGTGTCCGAGCTCTCGACTTCCAAAGTGATAGTCTTGCCAGT 2841110
Query 44098 TAAAGTCTTCACAAATATTTGCATG 44122
| |||||||||||| || ||||||
Sbjct 2841109 CAGAGTCTTCACAAAAATCTGCATG 2841085
Score = 82.4 bits (90), Expect = 5e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972
|||| ||| || || ||| |||||||| || || ||| | | || |||| ||
Sbjct 2870350 ACCAGATGGAGAGTCGACTCCTTTTGAATGTTGTAGTCGGCCAGTGTCCGGCCATCCTCA 2870291
Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032
| ||| || ||||| ||||||||||| ||||||||| | || | ||||| |||||
Sbjct 2870290 AGTTGCTTCCCTGCGAATATCAACCGCTGCTGGTCCGGGGGAATGCCTTCCTTATCCTGT 2870231
Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092
|| || ||||| || | | || || | |||||| || | || || || ||
Sbjct 2870230 ATCTTCGACTTGACATTATCGATCGTGTCAGAGCTCTCCACTTCCAAGGTGATAGTCTTG 2870171
Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122
||||| | ||||||||||| || ||||||
Sbjct 2870170 CCGGTAAGGGTCTTCACAAAAATCTGCATG 2870141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354620315559648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |