Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq49 107 2e-18
>seq49
Length=4798478
Score = 107 bits (118), Expect = 2e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
||||| || || || || ||||| || ||||| ||||| ||| ||| || ||||||
Sbjct 2870122 ACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCTTCT 2870063
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
| ||||| || ||| ||||||||||||| ||||| ||| | |||||||||||| |
Sbjct 2870062 AGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCTTTGTCCTGA 2870003
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTT 20178
|||||| ||| || | | | | || || || | || ||||| || || |||||
Sbjct 2870002 ATTTTTGCTTTGACATTGTCGATAGTGTC-AGAGCTCTCAACTTCCAAAGTGATTGTTTT 2869944
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209
|| || | || |||||||| |||||||||
Sbjct 2869943 CCCAGTAAGGGTCTTGACAAAGATTTGCATT 2869913
Score = 98.7 bits (108), Expect = 8e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
||||| || || || || ||||| || ||||||||||| ||| ||| || ||||||
Sbjct 2841066 ACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATCTTCT 2841007
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
| ||||| || ||| ||||||||||||| ||||| ||| | |||||| ||||| |
Sbjct 2841006 AGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGA 2840947
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTT 20178
||||| ||| || | | | | | || || | || ||||| || || |||||
Sbjct 2840946 ATTTTCGCTTTGACGTTGTCGATGGTGTC-AGAGCTCTCAACTTCCAAAGTGATTGTTTT 2840888
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209
|| || | || || |||||||||||||||
Sbjct 2840887 CCCAGTAAGGGTCTTCACAAAAATTTGCATT 2840857
Score = 98.7 bits (108), Expect = 8e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
||||| || || || || || || || ||||||||||| ||| ||| || ||||||
Sbjct 2847054 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATCTTCT 2846995
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
| ||||| || ||| ||||||||||||| ||||| ||| | |||||| ||||| |
Sbjct 2846994 AGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGA 2846935
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTT 20178
|||||| ||| || | | | | | || || | || ||||| || || |||||
Sbjct 2846934 ATTTTTGCTTTGACGTTGTCGATGGTGTC-AGAGCTCTCAACTTCCAAAGTGATTGTTTT 2846876
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209
|| || | || || |||||||||||||||
Sbjct 2846875 CCCAGTAAGGGTCTTCACAAAAATTTGCATT 2846845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419401183357656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |