Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq49 107 2e-18 >seq49 Length=4798478 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || || ||||| || ||||| ||||| ||| ||| || |||||| Sbjct 2870122 ACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCTTCT 2870063 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||||| || ||| ||||||||||||| ||||| ||| | |||||||||||| | Sbjct 2870062 AGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCTTTGTCCTGA 2870003 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTT 20178 |||||| ||| || | | | | || || || | || ||||| || || ||||| Sbjct 2870002 ATTTTTGCTTTGACATTGTCGATAGTGTC-AGAGCTCTCAACTTCCAAAGTGATTGTTTT 2869944 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || | || |||||||| ||||||||| Sbjct 2869943 CCCAGTAAGGGTCTTGACAAAGATTTGCATT 2869913 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || || ||||| || ||||||||||| ||| ||| || |||||| Sbjct 2841066 ACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATCTTCT 2841007 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||||| || ||| ||||||||||||| ||||| ||| | |||||| ||||| | Sbjct 2841006 AGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGA 2840947 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTT 20178 ||||| ||| || | | | | | || || | || ||||| || || ||||| Sbjct 2840946 ATTTTCGCTTTGACGTTGTCGATGGTGTC-AGAGCTCTCAACTTCCAAAGTGATTGTTTT 2840888 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || | || || ||||||||||||||| Sbjct 2840887 CCCAGTAAGGGTCTTCACAAAAATTTGCATT 2840857 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || || || || || ||||||||||| ||| ||| || |||||| Sbjct 2847054 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATCTTCT 2846995 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||||| || ||| ||||||||||||| ||||| ||| | |||||| ||||| | Sbjct 2846994 AGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGA 2846935 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTT 20178 |||||| ||| || | | | | | || || | || ||||| || || ||||| Sbjct 2846934 ATTTTTGCTTTGACGTTGTCGATGGTGTC-AGAGCTCTCAACTTCCAAAGTGATTGTTTT 2846876 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || | || || ||||||||||||||| Sbjct 2846875 CCCAGTAAGGGTCTTCACAAAAATTTGCATT 2846845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419401183357656