Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq652 149 1e-30 seq49 149 1e-30 seq203 140 7e-28 seq116 107 4e-18 seq569 105 2e-17 seq91 87.8 4e-12 seq66 86.0 1e-11 >seq652 Length=2384379 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | ||| || | || | ||| ||||| ||||| ||||| ||||| Sbjct 464831 ATGCCACCTCTGAGACGAAGCACCAAGTGAAGTGTTGATTCCTTCTGGATATTGTAGTCT 464772 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || ||||| || || || || || || || ||||| | ||| || ||||| || Sbjct 464771 GCCAGGGTCCTACCATCCTCAAGCTGCTTGCCTGCGAAAATCAACCTTTGCTGATCTGGG 464712 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || ||||| || || || |||||||| || | ||| || | ||| Sbjct 464711 GGAATTCCCTCCTTGTCCTGGATTTTCGCCTTTACATTATCGATGGTGTCCGAACTTTCA 464652 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| ||||| ||||| ||||| || || || |||||||||||||| Sbjct 464651 ACCTCTAGGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAATATCTGCAT 464602 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || ||||||| || || || || || || || || || Sbjct 465515 ATTCCACCACGGAGGCGAAGCACAAGATGTAGAGTTGACTCCTTTTGGATGTTGTAATCC 465456 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || || || || || ||||||||||| | |||||| ||||| || Sbjct 465455 GCCAGTGTCCGGCCATCCTCGAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGATCTGGG 465396 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || ||||| ||||| ||||| ||||| || |||||||| | || | || Sbjct 465395 GGAATGCCTTCCTTGTCCTGTATCTTAGCTTTGACATTATCAACGGTATC-CGAGCTCTC 465337 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| || ||||| || || |||||||||||||| Sbjct 465336 GACTTCCAAAGTTATGGTCTTCCCGGTAAGGGTCTTGACAAATATCTGCAT 465286 Score = 113 bits (124), Expect = 1e-19 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | || || | || | || ||||| || ||||| || ||||| Sbjct 465059 ATTCCTCCCCTCAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCT 465000 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || || || || || ||||| || ||||||||||| | |||||| || || || Sbjct 464999 GCGAGCGTCCTGCCATCCTCGAGTTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGG 464940 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || ||||| || || || || || || || | || || | ||| Sbjct 464939 GGGATTCCCTCCTTGTCCTGGATTTTCGCCTTCACGTTATCGATAGTGTCCGAACTTTCG 464880 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || ||||| || ||||| Sbjct 464879 ACCTCGAGGGTTATGGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCAT 464830 >seq49 Length=4798478 Score = 149 bits (164), Expect = 1e-30 Identities = 154/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || ||||| || | ||||| ||||| |||||||| ||||| ||| Sbjct 2870110 GTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCTTCTAGCTGTTTCCCA 2870051 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| |||||||| ||||| || || || |||||||| |||||||| |||||||| Sbjct 2870050 GCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCTTTGTCCTGAATTTTTGCTTTG 2869991 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || || || | || || || | || || || || |||||||| || Sbjct 2869990 ACATTGTCGATAGTGTC-AGAGCTCTCAACTTCCAAAGTGATTGTTTTCCCAGTAAGGGT 2869932 Query 104542 TTTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 2869931 CTTGACAAAGATTTGCATT 2869913 Score = 131 bits (144), Expect = 4e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || | | ||| ||||| |||||||| ||||| ||| Sbjct 2847042 GTGGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATCTTCTAGCTGTTTCCCA 2846983 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| |||||||| ||||| || || || ||||| || |||||||| |||||||| Sbjct 2846982 GCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGAATTTTTGCTTTG 2846923 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || || | || || || | || || || || |||||||| || Sbjct 2846922 ACGTTGTCGATGGTGTC-AGAGCTCTCAACTTCCAAAGTGATTGTTTTCCCAGTAAGGGT 2846864 Query 104542 TTTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 2846863 CTTCACAAAAATTTGCATT 2846845 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | | || || | || | || ||||| || || || || ||||| Sbjct 2869915 ATTCCTCCTCTCAAACGGAGGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCC 2869856 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||| || | || || || ||||| |||||||||||||| | || ||| || || || Sbjct 2869855 GCTAGTGTCCGGCCATCCTCGAGTTGCTTTCCAGCAAAAATCAACCGCTGCTGGTCTGGG 2869796 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| || || || || ||||| || | ||||||| | || Sbjct 2869795 GGAATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCGGAACTCTCC 2869736 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| ||||| || || || || || ||||| |||||||| Sbjct 2869735 ACCTCAAGAGTAATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 2869686 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || ||||||||||| || ||||||| | ||| || ||||| || ||||| Sbjct 2870572 TGCAAAGTCGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTCCTCCCGTCCTCGAGTTGC 2870513 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| || |||||||| || || || || || || || |||||||| ||||| Sbjct 2870512 TTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTC 2870453 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || || || || | ||| || | || ||||| | || || ||||| ||||| Sbjct 2870452 GCCTTCACGTTGTCGATGGTGTCTGAACTCTCCACCTCCAAAGTGATGGTCTTTCCAGTC 2870393 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| |||||||| Sbjct 2870392 AGGGTCTTGACAAAGATCTGCAT 2870370 >seq203 Length=8626763 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| ||||| || | | |||| || ||||| || || || ||| Sbjct 5730126 GTAGACTCCTTCTGAATGTTATAATCGGCCAAGGTTCGGCCATCTTCAAGCTGCTTGCCA 5730067 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || || ||||| || ||||| || || ||||| ||||||||| Sbjct 5730066 GCAAAGATAAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGAATTTTTGCTTTT 5730007 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || ||| ||| ||||| || || || ||||| || ||||| ||| Sbjct 5730006 ACATTATCGATTGTGTCGGAGCTTTCCACCTCAAGGGTGATTGTCTTGCCCGTAAGGGTT 5729947 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 5729946 TTCACAAAGATTTGCAT 5729930 Score = 127 bits (140), Expect = 5e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| ||||||||||| || || ||||| | || || || || ||||| || || ||||| Sbjct 5730355 TGTGGATTCTTTCTGGATGTTGTAGTCCGCAAGCGTCCTGCCATCTTCAAGCTGCTTTCC 5730296 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 |||||||| |||||||| || || || || || || || || || || ||||| || || Sbjct 5730295 TGCAAAAATGAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCTTGGATCTTAGCCTT 5730236 Query 104482 TACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 ||||| || | ||| || || | || || ||||| ||||| ||||| ||||| || | Sbjct 5730235 GACATTGTCAATGGTGTC-AGAGCTCTCAACTTCTAGGGTAATTGTCTTCCCAGTGAGGG 5730177 Query 104541 TTTTTACAAATATCTGCAT 104559 | || ||||| || ||||| Sbjct 5730176 TCTTCACAAAGATTTGCAT 5730158 >seq116 Length=10441785 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| ||||| ||||| | || || | ||||| || || || || || Sbjct 4726941 GTAGACTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCG 4726882 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || |||| ||| ||||| || || || || || || ||||||||||| || || Sbjct 4726881 GCGAAGATGAGCCGCTGCTGATCCGGCGGGATCCCCTCCTTGTCCTGAATCTTCGCCTTC 4726822 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || || | || | || ||||| || || || ||||| || || || || Sbjct 4726821 ACATTGTCGATCGTGTC-CGAGCTCTCCACCTCCAGCGTGATCGTCTTCCCTGTCAGGGT 4726763 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 4726762 CTTCACGAAGATCTGCAT 4726745 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 |||||||| ||||| ||||| || || ||||| || | ||| ||||| | || ||||| Sbjct 7850941 CCTTCTTTGTCCTGTATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCG 7850882 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || ||||| || || || ||||| || || ||||||||||| Sbjct 7850881 AGGGTTATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATTTT 7850835 >seq569 Length=4400913 Score = 105 bits (116), Expect = 2e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 2054715 AAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTC 2054774 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| || || ||||| || || |||||||| Sbjct 2054775 CTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCTTTATC 2054834 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || || || || | ||| ||| | || ||||| || || || || Sbjct 2054835 CTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGT 2054894 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| || || || ||||| || || |||||||| || Sbjct 2054895 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 2054930 >seq91 Length=4251426 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| | || ||||| | || || || || || || |||||||| | Sbjct 285773 TTCCTCCCCTGAGCCTCAACACCAGATGAAGAGTCGACTCCTTTTGGATGTTATAGTCTG 285832 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 ||||||| || ||||| | ||| || ||||||||||| | | |||||| || |||| Sbjct 285833 CAAGAGTTCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAATCGCTGTTGGTCCGGAG 285892 Query 104451 GTATTCCTTCTTTATCCT 104468 | || ||||| || |||| Sbjct 285893 GAATACCTTCCTTGTCCT 285910 >seq66 Length=2627919 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| |||||||||||||| || || ||||| || | ||| ||||| | || ||||| Sbjct 2156951 CCTTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCG 2156892 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || ||||| || || || ||||| || || |||||||| || Sbjct 2156891 AGAGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATCTT 2156845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150861770626208