Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq652 149 1e-30
seq49 149 1e-30
seq203 140 7e-28
seq116 107 4e-18
seq569 105 2e-17
seq91 87.8 4e-12
seq66 86.0 1e-11
>seq652
Length=2384379
Score = 149 bits (164), Expect = 1e-30
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| || | ||| || | || | ||| ||||| ||||| ||||| |||||
Sbjct 464831 ATGCCACCTCTGAGACGAAGCACCAAGTGAAGTGTTGATTCCTTCTGGATATTGTAGTCT 464772
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
| || || ||||| || || || || || || || ||||| | ||| || ||||| ||
Sbjct 464771 GCCAGGGTCCTACCATCCTCAAGCTGCTTGCCTGCGAAAATCAACCTTTGCTGATCTGGG 464712
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| ||||| || || ||||| || || || |||||||| || | ||| || | |||
Sbjct 464711 GGAATTCCCTCCTTGTCCTGGATTTTCGCCTTTACATTATCGATGGTGTCCGAACTTTCA 464652
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||||||| ||||| ||||| ||||| || || || ||||||||||||||
Sbjct 464651 ACCTCTAGGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAATATCTGCAT 464602
Score = 134 bits (148), Expect = 3e-26
Identities = 170/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | || | ||| || ||||||| || || || || || || || || ||
Sbjct 465515 ATTCCACCACGGAGGCGAAGCACAAGATGTAGAGTTGACTCCTTTTGGATGTTGTAATCC 465456
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
| || || | || || || || || || ||||||||||| | |||||| ||||| ||
Sbjct 465455 GCCAGTGTCCGGCCATCCTCGAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGATCTGGG 465396
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508
|| || ||||| || ||||| ||||| ||||| ||||| || |||||||| | || | ||
Sbjct 465395 GGAATGCCTTCCTTGTCCTGTATCTTAGCTTTGACATTATCAACGGTATC-CGAGCTCTC 465337
Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || | || || ||||| || ||||| || || ||||||||||||||
Sbjct 465336 GACTTCCAAAGTTATGGTCTTCCCGGTAAGGGTCTTGACAAATATCTGCAT 465286
Score = 113 bits (124), Expect = 1e-19
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || || || | || || | || | || ||||| || ||||| || |||||
Sbjct 465059 ATTCCTCCCCTCAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCT 465000
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
| || || || || || || ||||| || ||||||||||| | |||||| || || ||
Sbjct 464999 GCGAGCGTCCTGCCATCCTCGAGTTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGG 464940
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| ||||| || || ||||| || || || || || || || | || || | |||
Sbjct 464939 GGGATTCCCTCCTTGTCCTGGATTTTCGCCTTCACGTTATCGATAGTGTCCGAACTTTCG 464880
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || ||||| ||||| || || || ||||| || |||||
Sbjct 464879 ACCTCGAGGGTTATGGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCAT 464830
>seq49
Length=4798478
Score = 149 bits (164), Expect = 1e-30
Identities = 154/199 (77%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || |||||||| || ||||| || | ||||| ||||| |||||||| ||||| |||
Sbjct 2870110 GTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCTTCTAGCTGTTTCCCA 2870051
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| |||||||| ||||| || || || |||||||| |||||||| ||||||||
Sbjct 2870050 GCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCTTTGTCCTGAATTTTTGCTTTG 2869991
Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
||||| || | || || || | || || || | || || || || |||||||| ||
Sbjct 2869990 ACATTGTCGATAGTGTC-AGAGCTCTCAACTTCCAAAGTGATTGTTTTCCCAGTAAGGGT 2869932
Query 104542 TTTTACAAATATCTGCATT 104560
|| ||||| || ||||||
Sbjct 2869931 CTTGACAAAGATTTGCATT 2869913
Score = 131 bits (144), Expect = 4e-25
Identities = 150/199 (75%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || || | | ||| ||||| |||||||| ||||| |||
Sbjct 2847042 GTGGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATCTTCTAGCTGTTTCCCA 2846983
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| |||||||| ||||| || || || ||||| || |||||||| ||||||||
Sbjct 2846982 GCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGAATTTTTGCTTTG 2846923
Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| || || | ||| || || | || || || | || || || || |||||||| ||
Sbjct 2846922 ACGTTGTCGATGGTGTC-AGAGCTCTCAACTTCCAAAGTGATTGTTTTCCCAGTAAGGGT 2846864
Query 104542 TTTTACAAATATCTGCATT 104560
|| ||||| || ||||||
Sbjct 2846863 CTTCACAAAAATTTGCATT 2846845
Score = 131 bits (144), Expect = 4e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| ||||| | | || || | || | || ||||| || || || || |||||
Sbjct 2869915 ATTCCTCCTCTCAAACGGAGGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCC 2869856
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
| ||| || | || || || ||||| |||||||||||||| | || ||| || || ||
Sbjct 2869855 GCTAGTGTCCGGCCATCCTCGAGTTGCTTTCCAGCAAAAATCAACCGCTGCTGGTCTGGG 2869796
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || |||||||| ||||| || || || || ||||| || | ||||||| | ||
Sbjct 2869795 GGAATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCGGAACTCTCC 2869736
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || ||||| ||||| || || || || || ||||| ||||||||
Sbjct 2869735 ACCTCAAGAGTAATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 2869686
Score = 127 bits (140), Expect = 5e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416
|| || || || ||||||||||| || ||||||| | ||| || ||||| || |||||
Sbjct 2870572 TGCAAAGTCGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTCCTCCCGTCCTCGAGTTGC 2870513
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || ||||| || |||||||| || || || || || || || |||||||| |||||
Sbjct 2870512 TTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTC 2870453
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|| || || || || | ||| || | || ||||| | || || ||||| |||||
Sbjct 2870452 GCCTTCACGTTGTCGATGGTGTCTGAACTCTCCACCTCCAAAGTGATGGTCTTTCCAGTC 2870393
Query 104537 AGTGTTTTTACAAATATCTGCAT 104559
|| || || ||||| ||||||||
Sbjct 2870392 AGGGTCTTGACAAAGATCTGCAT 2870370
>seq203
Length=8626763
Score = 140 bits (154), Expect = 7e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || |||||||| ||||| || | | |||| || ||||| || || || |||
Sbjct 5730126 GTAGACTCCTTCTGAATGTTATAATCGGCCAAGGTTCGGCCATCTTCAAGCTGCTTGCCA 5730067
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || |||||||| || || ||||| || ||||| || || ||||| |||||||||
Sbjct 5730066 GCAAAGATAAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGAATTTTTGCTTTT 5730007
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | || ||| ||| ||||| || || || ||||| || ||||| |||
Sbjct 5730006 ACATTATCGATTGTGTCGGAGCTTTCCACCTCAAGGGTGATTGTCTTGCCCGTAAGGGTT 5729947
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| || |||||
Sbjct 5729946 TTCACAAAGATTTGCAT 5729930
Score = 127 bits (140), Expect = 5e-24
Identities = 149/199 (75%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421
||| ||||||||||| || || ||||| | || || || || ||||| || || |||||
Sbjct 5730355 TGTGGATTCTTTCTGGATGTTGTAGTCCGCAAGCGTCCTGCCATCTTCAAGCTGCTTTCC 5730296
Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481
|||||||| |||||||| || || || || || || || || || || ||||| || ||
Sbjct 5730295 TGCAAAAATGAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCTTGGATCTTAGCCTT 5730236
Query 104482 TACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540
||||| || | ||| || || | || || ||||| ||||| ||||| ||||| || |
Sbjct 5730235 GACATTGTCAATGGTGTC-AGAGCTCTCAACTTCTAGGGTAATTGTCTTCCCAGTGAGGG 5730177
Query 104541 TTTTTACAAATATCTGCAT 104559
| || ||||| || |||||
Sbjct 5730176 TCTTCACAAAGATTTGCAT 5730158
>seq116
Length=10441785
Score = 107 bits (118), Expect = 4e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || ||||| ||||| ||||| | || || | ||||| || || || || ||
Sbjct 4726941 GTAGACTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCG 4726882
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || |||| ||| ||||| || || || || || || ||||||||||| || ||
Sbjct 4726881 GCGAAGATGAGCCGCTGCTGATCCGGCGGGATCCCCTCCTTGTCCTGAATCTTCGCCTTC 4726822
Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
||||| || | || || | || | || ||||| || || || ||||| || || || ||
Sbjct 4726821 ACATTGTCGATCGTGTC-CGAGCTCTCCACCTCCAGCGTGATCGTCTTCCCTGTCAGGGT 4726763
Query 104542 TTTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 4726762 CTTCACGAAGATCTGCAT 4726745
Score = 86.0 bits (94), Expect = 1e-11
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515
|||||||| ||||| ||||| || || ||||| || | ||| ||||| | || |||||
Sbjct 7850941 CCTTCTTTGTCCTGTATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCG 7850882
Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
|| || || ||||| || || || ||||| || || |||||||||||
Sbjct 7850881 AGGGTTATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATTTT 7850835
>seq569
Length=4400913
Score = 105 bits (116), Expect = 2e-17
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | || || || ||||| || || ||||| | || || | |||||
Sbjct 2054715 AAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTC 2054774
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| || || || || || || || || | ||| || || ||||| || || ||||||||
Sbjct 2054775 CTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCTTTATC 2054834
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||| ||||| || || || || || | ||| ||| | || ||||| || || || ||
Sbjct 2054835 CTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGT 2054894
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||| || || || ||||| || || |||||||| ||
Sbjct 2054895 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 2054930
>seq91
Length=4251426
Score = 87.8 bits (96), Expect = 4e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390
|||| || || ||||| | || ||||| | || || || || || || |||||||| |
Sbjct 285773 TTCCTCCCCTGAGCCTCAACACCAGATGAAGAGTCGACTCCTTTTGGATGTTATAGTCTG 285832
Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450
||||||| || ||||| | ||| || ||||||||||| | | |||||| || ||||
Sbjct 285833 CAAGAGTTCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAATCGCTGTTGGTCCGGAG 285892
Query 104451 GTATTCCTTCTTTATCCT 104468
| || ||||| || ||||
Sbjct 285893 GAATACCTTCCTTGTCCT 285910
>seq66
Length=2627919
Score = 86.0 bits (94), Expect = 1e-11
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515
||||| |||||||||||||| || || ||||| || | ||| ||||| | || |||||
Sbjct 2156951 CCTTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCG 2156892
Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
|| || || ||||| || || || ||||| || || |||||||| ||
Sbjct 2156891 AGAGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATCTT 2156845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150861770626208
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