Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq22 104 2e-17
seq49 98.7 8e-16
seq116 91.5 1e-13
>seq22
Length=3960921
Score = 104 bits (114), Expect = 2e-17
Identities = 162/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| | | ||| | ||| | || || ||| |||||| || |||||||| || ||
Sbjct 263339 CCTCCCCTGAGCCTGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 263398
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| |||| |||||||||||||||| ||| || | || | ||||||||| ||| ||
Sbjct 263399 AGCGTTCGCCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGG 263458
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677
| | ||||||||| || || ||||| | | || ||||| |||| ||||
Sbjct 263459 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTCCA 263516
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||||| || ||||| || |||||||| || || || || |||||||||
Sbjct 263517 CCTCGAGGGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAGATCTGCATC 263566
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| || |||||| || ||||||||||| |||| || ||||||| ||||||
Sbjct 262451 TGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCGTCCTCGAGCTGC 262510
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| ||| || | || | | |||||| || || | | |||||||||| || ||
Sbjct 262511 TTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTG 262570
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||||| | | ||||| |||| ||| ||| | || ||||| || ||||||
Sbjct 262571 GCCTTGACATTGTCGATGGTGTCGGAGCTCTCGACCTCCAAGGTGATGGTCTTGCCGGTG 262630
Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726
|| || || ||||| ||||||||
Sbjct 262631 AGGGTCTTGACAAAGATCTGCAT 262653
>seq49
Length=4798478
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| | ||| | | || || ||||| ||| |||||||| |||||||| || ||
Sbjct 2869912 CCTCCTCTCAAACGGAGGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGCT 2869853
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| | || | ||||| || ||||| || | |||| || |||||||| || ||
Sbjct 2869852 AGTGTCCGGCCATCCTCGAGTTGCTTTCCAGCAAAAATCAACCGCTGCTGGTCTGGGGGA 2869793
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| | ||| |||||| ||||| ||| | | | |||||||||| | |||| |
Sbjct 2869792 ATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCGGAACTCTCCACC 2869733
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || ||||| || ||||||||||| |||||||| ||||||||
Sbjct 2869732 TCAAGAGTAATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 2869686
>seq116
Length=10441785
Score = 91.5 bits (100), Expect = 1e-13
Identities = 162/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|||||||| | ||| | ||| | || || ||| |||||| || ||||||||||| ||
Sbjct 4712072 CCTCCGCGGAGCCTGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCG 4712131
Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
| ||| || ||||||| |||||||| ||| || | || | |||||||||||| |
Sbjct 4712132 AGG-GTC-CTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCGGGAG 4712189
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675
| | | ||||||||| || || ||||| | | || ||||| |||| |||
Sbjct 4712190 GGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTC 4712247
Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| ||| | || ||||| || ||||| || || || || || ||||||||
Sbjct 4712248 CACCTCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4712298
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||||||||| | ||| | || | || || ||| |||||| || ||||||||||| ||
Sbjct 4711843 ACCTCCGCGGAGCCTCAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGC 4711902
Query 48559 CAATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACC 48616
| ||| || ||||||| |||||||| ||| || | || | ||||||||||||| |
Sbjct 4711903 GAGG-GTC-CTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGC 4711960
Query 48617 GGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCC 48676
|| | | ||||||||| || || ||||| | || || || | |||
Sbjct 4711961 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCCGAGCTCTCG 4712020
Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| || |||||||| ||||| || || || || || ||||||||
Sbjct 4712021 ACCTCGAGCGTGATGGTTTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4712070
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| || | ||| | ||| | ||||| ||| |||||| || |||||||| || ||
Sbjct 4712300 CCTCCACGGAGCCTGAGCACGAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 4712359
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| || ||||||| |||||||| ||| || | || | ||||||||||| ||
Sbjct 4712360 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGG 4712419
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677
| | ||||||||| || || ||||| | | || ||||| |||| |||
Sbjct 4712420 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTCGA 4712477
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||||| || ||||| || ||||| || || || || || |||||||||
Sbjct 4712478 CCTCGAGCGTGATGGTCTTCCCGGTCAGGGTCTTGACGAAGATCTGCATC 4712527
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||||||||| | ||| | || | || || || ||| || || ||||||||||| ||
Sbjct 4726744 ACCTCCGCGGAGCCTCAGGACGAGGTGGAGCGTCGACTCTTTCTGGATGTTGTAATCGGC 4726685
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
| || ||||||| |||||||| ||| || | || | ||||||||||||| |||
Sbjct 4726684 GAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGCGG 4726625
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676
| | ||||| ||| ||||| ||||| | | || || || |||| |||
Sbjct 4726624 GATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTGTCG--ATCGTGTCGGAGCTCTCG 4726567
Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| || ||||| || ||||| || || || || || ||||||||
Sbjct 4726566 ACCTCGAGCGTGATGGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCAT 4726517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421064445652376
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |