Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq22 104 2e-17 seq49 98.7 8e-16 seq116 91.5 1e-13 >seq22 Length=3960921 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | | ||| | ||| | || || ||| |||||| || |||||||| || || Sbjct 263339 CCTCCCCTGAGCCTGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 263398 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | |||| |||||||||||||||| ||| || | || | ||||||||| ||| || Sbjct 263399 AGCGTTCGCCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGG 263458 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | ||||||||| || || ||||| | | || ||||| |||| |||| Sbjct 263459 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTCCA 263516 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || ||||| || |||||||| || || || || ||||||||| Sbjct 263517 CCTCGAGGGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAGATCTGCATC 263566 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || ||||||||||| |||| || ||||||| |||||| Sbjct 262451 TGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCGTCCTCGAGCTGC 262510 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | | |||||| || || | | |||||||||| || || Sbjct 262511 TTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTG 262570 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| |||| ||| ||| | || ||||| || |||||| Sbjct 262571 GCCTTGACATTGTCGATGGTGTCGGAGCTCTCGACCTCCAAGGTGATGGTCTTGCCGGTG 262630 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||| |||||||| Sbjct 262631 AGGGTCTTGACAAAGATCTGCAT 262653 >seq49 Length=4798478 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | || || ||||| ||| |||||||| |||||||| || || Sbjct 2869912 CCTCCTCTCAAACGGAGGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGCT 2869853 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | | || | ||||| || ||||| || | |||| || |||||||| || || Sbjct 2869852 AGTGTCCGGCCATCCTCGAGTTGCTTTCCAGCAAAAATCAACCGCTGCTGGTCTGGGGGA 2869793 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||| |||||| ||||| ||| | | | |||||||||| | |||| | Sbjct 2869792 ATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCGGAACTCTCCACC 2869733 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || ||||||||||| |||||||| |||||||| Sbjct 2869732 TCAAGAGTAATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 2869686 >seq116 Length=10441785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | ||| | ||| | || || ||| |||||| || ||||||||||| || Sbjct 4712072 CCTCCGCGGAGCCTGAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCG 4712131 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | ||| || ||||||| |||||||| ||| || | || | |||||||||||| | Sbjct 4712132 AGG-GTC-CTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCGGGAG 4712189 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | | ||||||||| || || ||||| | | || ||||| |||| ||| Sbjct 4712190 GGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTC 4712247 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||| | || ||||| || ||||| || || || || || |||||||| Sbjct 4712248 CACCTCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4712298 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | ||| | || | || || ||| |||||| || ||||||||||| || Sbjct 4711843 ACCTCCGCGGAGCCTCAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGC 4711902 Query 48559 CAATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACC 48616 | ||| || ||||||| |||||||| ||| || | || | ||||||||||||| | Sbjct 4711903 GAGG-GTC-CTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGC 4711960 Query 48617 GGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCC 48676 || | | ||||||||| || || ||||| | || || || | ||| Sbjct 4711961 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCCGAGCTCTCG 4712020 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || |||||||| ||||| || || || || || |||||||| Sbjct 4712021 ACCTCGAGCGTGATGGTTTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4712070 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | ||| | ||| | ||||| ||| |||||| || |||||||| || || Sbjct 4712300 CCTCCACGGAGCCTGAGCACGAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 4712359 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || ||||||| |||||||| ||| || | || | ||||||||||| || Sbjct 4712360 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGG 4712419 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | ||||||||| || || ||||| | | || ||||| |||| ||| Sbjct 4712420 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTCGA 4712477 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || ||||| || ||||| || || || || || ||||||||| Sbjct 4712478 CCTCGAGCGTGATGGTCTTCCCGGTCAGGGTCTTGACGAAGATCTGCATC 4712527 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | ||| | || | || || || ||| || || ||||||||||| || Sbjct 4726744 ACCTCCGCGGAGCCTCAGGACGAGGTGGAGCGTCGACTCTTTCTGGATGTTGTAATCGGC 4726685 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || ||||||| |||||||| ||| || | || | ||||||||||||| ||| Sbjct 4726684 GAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGCGG 4726625 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | ||||| ||| ||||| ||||| | | || || || |||| ||| Sbjct 4726624 GATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTGTCG--ATCGTGTCGGAGCTCTCG 4726567 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || ||||| || || || || || |||||||| Sbjct 4726566 ACCTCGAGCGTGATGGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCAT 4726517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421064445652376