Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq77 111 8e-20 seq18 111 8e-20 seq12 107 1e-18 seq134 105 3e-18 seq74 105 3e-18 seq14 105 3e-18 seq685 104 1e-17 seq232 104 1e-17 seq22 104 1e-17 seq3 104 1e-17 seq116 100 1e-16 >seq77 Length=8408033 Score = 111 bits (122), Expect = 8e-20 Identities = 82/95 (86%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||||||||| || | || ||||||||| | | |||||||| |||||||||||||||| Sbjct 7005955 AATTAATAATAAGAGAGAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 7005896 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||||||||||||| ||||| Sbjct 7005895 AGCACGACGCTCTAACCAACTGAGCTAATAGGCCG 7005861 >seq18 Length=12238210 Score = 111 bits (122), Expect = 8e-20 Identities = 82/94 (87%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 11437 AATTAATA-AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 |||| ||| ||||||| ||| |||||||| | | |||||||| |||||||||||||||| Sbjct 4215393 AATTGATATAAAAATCGAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 4215335 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| |||||||||| |||| Sbjct 4215334 AGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 4215301 >seq12 Length=4956709 Score = 107 bits (118), Expect = 1e-18 Identities = 79/92 (86%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 || ||||||| ||| ||||||||| | | |||||||| |||||||||||||||||| Sbjct 1770046 AAAAAAAAATAAAAGGGATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAG 1769987 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| ||||||||||||||| |||| Sbjct 1769986 CACGACGCTCTAACCAACTGAGCTAATAGGCC 1769955 >seq134 Length=15115857 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 12856692 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 12856751 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 12856752 CTGAGCTAATAGGCC 12856766 >seq74 Length=10145792 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 6753074 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 6753133 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 6753134 CTGAGCTAATAGGCC 6753148 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 8514622 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 8514681 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 8514682 TGAGCTAATAGGCC 8514695 >seq14 Length=5878743 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1737819 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 1737878 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 1737879 AACTGAGCTAATAGGCC 1737895 Score = 96.9 bits (106), Expect = 2e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| | |||||||||||||||||||||||| || ||||| Sbjct 226047 TTGGCCCATGCAGGTCTCGAACCTGCAACCTTCGCGTTATTAGCACGACGCACTGACCAA 225988 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 225987 CTGAGCTAATAGGCC 225973 >seq685 Length=723526 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 353344 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 353403 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 353404 TGAGCTAATAGGCC 353417 >seq232 Length=1470771 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 88980 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 89039 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 89040 TGAGCTAATAGGCC 89053 >seq22 Length=3960921 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1769889 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1769948 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1769949 TGAGCTAATAGGCC 1769962 >seq3 Length=5051733 Score = 104 bits (114), Expect = 1e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 2772981 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 2773040 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 2773041 GCTGAGCTAATAGGCC 2773056 >seq116 Length=10441785 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 8706175 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 8706116 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 8706115 TGAGCTAATAGGCC 8706102 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261375272452576