Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq77 111 8e-20
seq18 111 8e-20
seq12 107 1e-18
seq134 105 3e-18
seq74 105 3e-18
seq14 105 3e-18
seq685 104 1e-17
seq232 104 1e-17
seq22 104 1e-17
seq3 104 1e-17
seq116 100 1e-16
>seq77
Length=8408033
Score = 111 bits (122), Expect = 8e-20
Identities = 82/95 (86%), Gaps = 1/95 (1%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495
||||||||| || | || ||||||||| | | |||||||| ||||||||||||||||
Sbjct 7005955 AATTAATAATAAGAGAGAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 7005896
Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
||||||||||||| ||||||||||||||| |||||
Sbjct 7005895 AGCACGACGCTCTAACCAACTGAGCTAATAGGCCG 7005861
>seq18
Length=12238210
Score = 111 bits (122), Expect = 8e-20
Identities = 82/94 (87%), Gaps = 2/94 (2%)
Strand=Plus/Minus
Query 11437 AATTAATA-AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495
|||| ||| ||||||| ||| |||||||| | | |||||||| ||||||||||||||||
Sbjct 4215393 AATTGATATAAAAATCGAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 4215335
Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||| |||| |||||||||| ||||
Sbjct 4215334 AGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 4215301
>seq12
Length=4956709
Score = 107 bits (118), Expect = 1e-18
Identities = 79/92 (86%), Gaps = 3/92 (3%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497
|| ||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||
Sbjct 1770046 AAAAAAAAATAAAAGGGATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAG 1769987
Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||| ||||||||||||||| ||||
Sbjct 1769986 CACGACGCTCTAACCAACTGAGCTAATAGGCC 1769955
>seq134
Length=15115857
Score = 105 bits (116), Expect = 3e-18
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 12856692 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 12856751
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 12856752 CTGAGCTAATAGGCC 12856766
>seq74
Length=10145792
Score = 105 bits (116), Expect = 3e-18
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 6753074 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 6753133
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 6753134 CTGAGCTAATAGGCC 6753148
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 8514622 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 8514681
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 8514682 TGAGCTAATAGGCC 8514695
>seq14
Length=5878743
Score = 105 bits (116), Expect = 3e-18
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1737819 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 1737878
Query 11513 AACTGAGCTAATGGGCC 11529
|||||||||||| ||||
Sbjct 1737879 AACTGAGCTAATAGGCC 1737895
Score = 96.9 bits (106), Expect = 2e-15
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| | |||||||||||||||||||||||| || |||||
Sbjct 226047 TTGGCCCATGCAGGTCTCGAACCTGCAACCTTCGCGTTATTAGCACGACGCACTGACCAA 225988
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 225987 CTGAGCTAATAGGCC 225973
>seq685
Length=723526
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 353344 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 353403
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 353404 TGAGCTAATAGGCC 353417
>seq232
Length=1470771
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 88980 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 89039
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 89040 TGAGCTAATAGGCC 89053
>seq22
Length=3960921
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1769889 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1769948
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 1769949 TGAGCTAATAGGCC 1769962
>seq3
Length=5051733
Score = 104 bits (114), Expect = 1e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513
||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 2772981 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 2773040
Query 11514 ACTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 2773041 GCTGAGCTAATAGGCC 2773056
>seq116
Length=10441785
Score = 100 bits (110), Expect = 1e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 8706175 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 8706116
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 8706115 TGAGCTAATAGGCC 8706102
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261375272452576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |