Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq27477 129 9e-26 seq116 123 4e-24 seq14 120 5e-23 seq24 114 2e-21 seq74 105 1e-18 seq151 96.9 5e-16 seq10711 93.3 7e-15 >seq27477 Length=2255420 Score = 129 bits (142), Expect = 9e-26 Identities = 165/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || || |||||||| || |||||||||||||| || Sbjct 269114 GCGAAGCGCCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCAGCCAT 269172 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || || || || || || || || ||||| || || || |||| || |||| Sbjct 269173 ACGCCGCCTCGCCCGCCGCGGGGGCGTGAAGCGCATCAGCGGCCTGATCTACGAGGAGAC 269232 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 269233 CCGGGGGGTCCTCAAGATCTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 269292 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| || ||||| |||||| ||||||| ||||||| || Sbjct 269293 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGC 269337 >seq116 Length=10441785 Score = 123 bits (136), Expect = 4e-24 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| || || || Sbjct 2269164 CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCCCGCCGCGGC 2269223 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| || || | |||| || |||| || | || | ||||||||| Sbjct 2269224 GGCGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGACCCGCGGCGTCCTCAAGATCTTC 2269283 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 2269284 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 2269343 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| ||||||| ||||||| || Sbjct 2269344 ACCGCCATGGACGTCGTCTACGC 2269366 >seq14 Length=5878743 Score = 120 bits (132), Expect = 5e-23 Identities = 174/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | || |||| | || || || || |||||||| || ||||||||||| || || Sbjct 5458498 GCGAAGAGGCACCGCAAGGTC-CTCCGGGACAACATCCAGGGCATCACCAAGCCCGCCAT 5458440 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || |||||| || || | |||| || |||| Sbjct 5458439 CCGCCGCCTGGCCCGCCGCGGCGGCGTGAAGCGTATCAGCGGCCTCATCTACGAGGAGAC 5458380 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || || ||||| Sbjct 5458379 CCGCGGCGTCCTAAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACGTACACCGA 5458320 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || | || || Sbjct 5458319 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGAGGCAGGG 5458260 Query 16672 CCG 16674 ||| Sbjct 5458259 CCG 5458257 Score = 114 bits (126), Expect = 2e-21 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| || ||||| || || || Sbjct 3214548 CTGCGCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGCGGCTGGCCCGCCGGGGC 3214607 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| || || || |||| || |||| || | || ||||||||||| Sbjct 3214608 GGCGTGAAGCGCATCAGCGGGCTGATCTACGAGGAGACCCGGGGCGTGCTGAAGATCTTC 3214667 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| ||| || | ||| ||||||||||| || ||||| ||| Sbjct 3214668 CTGGAGAACGTGATCCGTGACGCCGTGACCTACACCGAGCACGCCCGCCGGAAGACCGTC 3214727 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| ||||||| |||| || || Sbjct 3214728 ACCGCCATGGACGTCGTGTACGC 3214750 >seq24 Length=10012559 Score = 114 bits (126), Expect = 2e-21 Identities = 187/267 (70%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | | || || || || |||||||| || ||||| ||||| || || Sbjct 5521967 GCGAAGCGGCACCGGAAGGTC-CTCCGCGACAACATCCAGGGGATCACGAAGCCGGCGAT 5522025 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| || || | |||| || |||| Sbjct 5522026 CCGCCGCCTGGCGCGGCGGGGCGGCGTGAAGCGCATCAGCGGGCTCATCTACGAGGAGAC 5522085 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | |||||||||||| ||| ||| ||| || || || ||| ||||| Sbjct 5522086 TCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTGATCAGGGACGCCGTCACCTACACCGA 5522145 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||| ||||| || || ||||||| ||||||| || | || | || || Sbjct 5522146 GCACGCACGACGCAAGACGGTGACGGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGG 5522205 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||| | | ||||| || || |||| Sbjct 5522206 CCGCACTCTGTATGGGTTCGGCGGTTA 5522232 >seq74 Length=10145792 Score = 105 bits (116), Expect = 1e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| || || || Sbjct 4485306 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGGCTGGCCCGCCGCGGC 4485365 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| || || || |||| || |||| || | || ||||||||||| Sbjct 4485366 GGGGTGAAGCGGATCAGCGGGCTGATCTACGAGGAGACGCGCGGGGTGCTGAAGATCTTC 4485425 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || | ||| || |||||||| || ||||| || Sbjct 4485426 CTGGAGAACGTGATCCGCGACGCCGTGACCTACACGGAGCACGCGCGGCGGAAGACGGTG 4485485 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| ||||||| |||| || || Sbjct 4485486 ACCGCCATGGACGTCGTGTACGC 4485508 >seq151 Length=2833985 Score = 96.9 bits (106), Expect = 5e-16 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| || ||||| | || || || || || || || Sbjct 1698219 GACAACATCCAGGGGATCACCAAGCCCGCCATCCGGAGGCTCGCCCGCCGGGGCGGCGTG 1698278 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| | || || |||| || |||| |||| || | |||||||||||| || Sbjct 1698279 AAGCGCATAAGCGGGCTGATCTACGAGGAGACCCGTGGCGTCCTCAAGATCTTCCTCGAG 1698338 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| || | ||| ||||||||||| || ||||| || || || Sbjct 1698339 AACGTGATCCGTGACGCCGTGACCTACACCGAGCACGCCCGGCGGAAGACGGTGACTGCC 1698398 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| | || || || | || | || || || | | | ||||| || || Sbjct 1698399 ATGGACGTGGTGTACGCGCTCAAGAGGCAGGGGCGCACGCTCTATGGGTTCGG 1698451 >seq10711 Length=185 Score = 93.3 bits (102), Expect = 7e-15 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| |||||||| || ||||| || || || Sbjct 8 CTCCGGGACAACATCCAGGGCATCACCAAGCCCGCTATCCGCCGCCTGGCCCGCCGCGGC 67 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| || || | |||| || |||| || | || | ||||||||| Sbjct 68 GGCGTGAAGCGCATCAGCGGCCTCATCTACGAGGAGACCCGCGGGGTCCTCAAGATCTTC 127 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 ||| ||| ||| |||| || || || || ||||||||||| Sbjct 128 CTCGAGAACGTCATCCGCGACGCCGTCACGTACACCGAGCACGC 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79041941168568