Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_006882.2
Length=45176
Score E
Sequences producing significant alignments: (Bits) Value
seq444 572 5e-159
seq31551 233 6e-57
seq31730 187 7e-43
seq34854 167 7e-37
seq31523 165 2e-36
seq77 134 4e-27
seq85 127 6e-25
seq203 122 3e-23
seq134 107 6e-19
seq151 96.9 1e-15
>seq444
Length=4271
Score = 572 bits (634), Expect = 5e-159
Identities = 727/995 (73%), Gaps = 4/995 (0%)
Strand=Plus/Minus
Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349
|| ||| | ||| | || || || || ||||| ||||| | || |||||||| || |
Sbjct 1114 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1055
Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409
||||| ||| |||| | | || ||| || ||||| |||| || || || || ||
Sbjct 1054 ATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCT 995
Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469
|| |||||||| ||||| || ||||| || ||||| || || | | ||||||||||||
Sbjct 994 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 935
Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529
|||||||| || || | |||| | || || || ||| |||| ||||| || |||
Sbjct 934 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATC 875
Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589
|||||||| | | | ||||| ||| |||||||||||||||| ||| |||| ||||
Sbjct 874 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 815
Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649
| ||||| ||| | || ||||| || ||| | |||||||||| || | |
Sbjct 814 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 755
Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709
| || ||| | || ||||| || |||||| |||| || | |||| || ||||
Sbjct 754 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 695
Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768
|| ||||| | | || ||| |||| || || |||||| ||||||||||||||| || ||
Sbjct 694 GT-TTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 636
Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828
|||||||||||| ||||||||| | |||||||| || || ||||| || |||||||| ||
Sbjct 635 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 576
Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888
|| |||||| | ||||| ||||| |||||||| || || ||||| ||||||||| ||
Sbjct 575 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGG 516
Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948
||||| ||||| | |||| |||||| || || ||| ||| || | ||
Sbjct 515 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 456
Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008
|| | ||||||||||| ||||| || || || ||||| ||||| ||||| || |||||
Sbjct 455 TTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 396
Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068
||||||| || ||||||||| |||||| ||||||||||||||||||||||| | ||
Sbjct 395 CCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 336
Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128
||| || || || || || ||| |||| | | || || | ||||||||||||||
Sbjct 335 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 276
Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187
||| |||||||| || || ||||| |||||||||||| ||||| ||| | || |
Sbjct 275 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA-GGACGTGTTATTAATA 217
Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247
| ||||||||| | | || | |||||||| || | ||||||||||| || || ||||
Sbjct 216 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 157
Query 20248 CTCATAACTTCCCACTTGATTTAGCTTCGGCTGAG 20282
|||| |||||||| || || ||||| | | ||||
Sbjct 156 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 122
>seq31551
Length=1713
Score = 233 bits (258), Expect = 6e-57
Identities = 323/446 (72%), Gaps = 11/446 (2%)
Strand=Plus/Minus
Query 19844 TGTTGCTGGCGTA-TTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTT 19902
||||| || ||| ||||| || ||||| ||| ||||||||| || ||||| || |
Sbjct 1161 TGTTG--GGTGTACTTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACCT 1104
Query 19903 CCTCGATCATCAAGGAAACAACTGAGGATGTATC-GCAGAACTATGGCTATAAGTTCGGG 19961
| | |||| |||||| || || ||| ||| || | || || || | |||||
Sbjct 1103 CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGTA-GGTTACAGATTCGGT 1045
Query 19962 CAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTT 20021
||||| ||||| || |||||||| || ||||| || || || ||||| ||||||| ||
Sbjct 1044 CAAGAAGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTC 985
Query 20022 CAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTG 20081
||||||||| | |||| ||||||||||| ||||||||||| || ||| ||| || ||
Sbjct 984 CAATATGCTAGTGTCAACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGCCTGTA 925
Query 20082 GTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTT 20141
|| || || ||| | || | | || || |||| |||||||| || | || |||||
Sbjct 924 GTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACGGTTTC 865
Query 20142 AACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAG-----ATAATCCCAACATGGGCT 20195
|| || ||||| || ||||||||| ||||| | |||| |||| || ||||||
Sbjct 864 AATTTCAACCAATCTGTAGTTGATAGTCAAGGAAAAGGTCATGTAATTAATACCTGGGCT 805
Query 20196 GATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAAC 20255
||| | | || | |||||||| || | ||||||||||| || || ||||||||||||
Sbjct 804 GATCTCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 745
Query 20256 TTCCCACTTGATTTAGCTTCGGCTGA 20281
||||| || || ||||| | | |||
Sbjct 744 TTCCCCCTAGACCTAGCTGCTGTTGA 719
>seq31730
Length=297
Score = 187 bits (206), Expect = 7e-43
Identities = 199/260 (77%), Gaps = 2/260 (1%)
Strand=Plus/Plus
Query 19630 AGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCAC 19689
|||||||||| || | | | || ||| | || ||||| || |||||| |||| |
Sbjct 11 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 70
Query 19690 CACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGT 19748
| | |||| ||| |||||| ||||| | | |||||| |||| ||||| |||||| |
Sbjct 71 CTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCT 129
Query 19749 GATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAA 19808
|||||||||||||| || || ||||||||||| ||||| ||| | |||||||| || ||
Sbjct 130 GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAG 189
Query 19809 CACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCT 19868
||||| ||||||||||| || || |||||| | || || ||||| |||||||| || ||
Sbjct 190 CACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCC 249
Query 19869 CTTTTCTCTGCTATGCACGG 19888
|| ||| ||||||||| ||
Sbjct 250 CTATTCAGTGCTATGCATGG 269
>seq34854
Length=328
Score = 167 bits (184), Expect = 7e-37
Identities = 212/289 (73%), Gaps = 2/289 (1%)
Strand=Plus/Plus
Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349
|| ||| | ||| | || || ||||| ||||| ||||| | || |||||||| || |
Sbjct 32 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 91
Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409
||||| ||| |||| | | || ||| || ||||| | ||||| || || || ||
Sbjct 92 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCT 151
Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469
|| |||||||| ||||| || ||||| || ||||| || || || | || |||||||||
Sbjct 152 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 211
Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529
||||| || || || | |||| | || || ||||| |||| ||||| || ||
Sbjct 212 ATTATCTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATA 271
Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATAT 19577
||||||| ||||| || | ||||| |||||||||||||||||||| |||
Sbjct 272 TGGGAAG-CGGCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTAT 319
>seq31523
Length=225
Score = 165 bits (182), Expect = 2e-36
Identities = 151/191 (79%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 19956 TTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTG 20015
||||| ||||| ||||| || |||||||| || ||||| || || || ||||| |||||
Sbjct 34 TTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTG 93
Query 20016 ATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTC 20075
|| || ||||||||| |||||| ||||||||||||||||| ||||| || ||| |||
Sbjct 94 ATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGG 153
Query 20076 CCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAAT 20135
|| || || || || ||| | || | | || ||| ||||||||||||||||||| |||
Sbjct 154 CCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAAT 213
Query 20136 GGTTTTAACTT 20146
||||| || ||
Sbjct 214 GGTTTCAATTT 224
>seq77
Length=8408033
Score = 134 bits (148), Expect = 4e-27
Identities = 255/371 (69%), Gaps = 6/371 (2%)
Strand=Plus/Plus
Query 19395 TTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTA 19454
|| || || || || || ||||||| ||||| || || | || ||||| | || ||
Sbjct 2698695 TTCATGGCTGCTCCTCCAATAGATATTGATGGTATTCGCAAACCTATTTCCAGATCTCTA 2698754
Query 19455 ATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTG 19514
| || |||||||||||||| || || || | |||||| || || ||||| ||
Sbjct 2698755 CTTTATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCAGCTATAGGTTTG 2698814
Query 19515 CACTTTTATCCGATCTGGGAAGC--CGGCACTTTAGATGAGTGGTTATACAACGGCGGTC 19572
|| |||| || || | |||||| | || || ||||| |||||||||||||||||||
Sbjct 2698815 CATATTTACCCAATGTAGGAAGCATCATCAGTT--GATGAATGGTTATACAACGGCGGTC 2698872
Query 19573 CATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGT 19632
| ||| | || |||| | ||||||||| | || ||||| ||| ||| | |||
Sbjct 2698873 CTTATGAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGT 2698932
Query 19633 GGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCAC 19692
||||||| || | |||| ||| | | ||||| || |||||| |||| ||
Sbjct 2698933 GGGAACTTAGTTTTCGTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTG 2698992
Query 19693 TATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGAT 19751
| || ||| || ||| ||||| | | |||||| |||| || |||||| ||||
Sbjct 2698993 TTGCAATTGCTATTATTGT-TTTCTTGATCTACCCAATTGGTCACATAAGTTTTTATGAT 2699051
Query 19752 GGTATGCCTCT 19762
||||||||||
Sbjct 2699052 TGTATGCCTCT 2699062
>seq85
Length=5226098
Score = 127 bits (140), Expect = 6e-25
Identities = 131/169 (78%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 20106 GGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT 20165
|| ||| ||||||||||||||||||| |||||||| || || ||||| || |||||||||
Sbjct 1123353 GGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGAT 1123294
Query 20166 -GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATT 20224
||||| || |||| ||||||| |||| | | ||| | |||||||| || |
Sbjct 1123293 AGTCAA-GGTCGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTAT 1123235
Query 20225 TGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCT 20273
||||||||||| || | ||||||||||||||||| || || |||||
Sbjct 1123234 GGAAGTTATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGCT 1123186
>seq203
Length=8626763
Score = 122 bits (134), Expect = 3e-23
Identities = 152/206 (74%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 19630 AGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCAC 19689
||| |||||| || | | |||| ||| | || ||||| | || |||||| |||| |
Sbjct 3756505 AGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGTTGCATATTCAGCTC 3756446
Query 19690 CACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGT 19748
| | || | ||| |||||| ||||| | | |||||| |||| ||||| || ||| |
Sbjct 3756445 CGGTTGCAACTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGATTTTAT 3756387
Query 19749 GATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAA 19808
|||| ||||||||| || || || || |||| || || ||| | ||||||||||| ||
Sbjct 3756386 GATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTGTATTCCAAGCTGAG 3756327
Query 19809 CACAATATCCTTATGCATCCGTTCCA 19834
||||| ||||||||| |||| || ||
Sbjct 3756326 CACAACATCCTTATGTATCCATTGCA 3756301
>seq134
Length=15115857
Score = 107 bits (118), Expect = 6e-19
Identities = 189/269 (70%), Gaps = 5/269 (2%)
Strand=Plus/Minus
Query 19335 TGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCC 19394
|||||||| || | ||||| ||| |||| | || | || || ||||| | |||
Sbjct 3765998 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT-CAGCTTCTATATTTATTATTGCC 3765940
Query 19395 TTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTA 19454
|| || | || || || || ||||| ||||| || || |||| |||| || || ||
Sbjct 3765939 TTCATTGTTGCTCCTCCAGTTGATATTGATGGTATCTGTAAGCCTATTTCTGGATCTCTA 3765880
Query 19455 ATGTACGGAAACAATATTATTTCTGGAG-CAGTAGTTCCAAGCTCCAATG-CAATAGGAC 19512
| || || ||||||||||||| || | || || |||| | |||| | | |||||
Sbjct 3765879 CTTTATGGTAACAATATTATTTATGATGGCATTA-TTCCTA-CTCCTACAACTATAGGTT 3765822
Query 19513 TGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTC 19572
|||| ||||| | || |||||||| | || | ||||| ||||||||||||| | |||
Sbjct 3765821 TGCATTTTTACTCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAACGACAGTC 3765762
Query 19573 CATATCAACTTGTTGTCTTCCACTTCTTA 19601
| ||| | || |||| | |||||||||
Sbjct 3765761 CTTATGAGCTAATTGTTCTACACTTCTTA 3765733
>seq151
Length=2833985
Score = 96.9 bits (106), Expect = 1e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 19968 GAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATAT 20027
||||| || |||||||| || ||||| || || || ||||| ||||||| || | ||||
Sbjct 2328018 GAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCTATAT 2328077
Query 20028 GCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTT 20073
||| |||||| ||||||||||| ||||| ||||| || ||| |||
Sbjct 2328078 GCTAGTTTCAACAATTCTCGTTCGTTACACTTCTTCCTAGCTGCTT 2328123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 144379206284256
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