Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq444 572 5e-159 seq31551 233 6e-57 seq31730 187 7e-43 seq34854 167 7e-37 seq31523 165 2e-36 seq77 134 4e-27 seq85 127 6e-25 seq203 122 3e-23 seq134 107 6e-19 seq151 96.9 1e-15 >seq444 Length=4271 Score = 572 bits (634), Expect = 5e-159 Identities = 727/995 (73%), Gaps = 4/995 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| ||||| | || |||||||| || | Sbjct 1114 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1055 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| |||| || || || || || Sbjct 1054 ATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCT 995 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || | | |||||||||||| Sbjct 994 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 935 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||||| || || | |||| | || || || ||| |||| ||||| || ||| Sbjct 934 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATC 875 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | | | ||||| ||| |||||||||||||||| ||| |||| |||| Sbjct 874 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 815 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||| ||| | || ||||| || ||| | |||||||||| || | | Sbjct 814 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 755 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 | || ||| | || ||||| || |||||| |||| || | |||| || |||| Sbjct 754 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 695 Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| | | || ||| |||| || || |||||| ||||||||||||||| || || Sbjct 694 GT-TTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 636 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 |||||||||||| ||||||||| | |||||||| || || ||||| || |||||||| || Sbjct 635 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 576 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || |||||| | ||||| ||||| |||||||| || || ||||| ||||||||| || Sbjct 575 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGG 516 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 ||||| ||||| | |||| |||||| || || ||| ||| || | || Sbjct 515 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 456 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || | ||||||||||| ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 455 TTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 396 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 ||||||| || ||||||||| |||||| ||||||||||||||||||||||| | || Sbjct 395 CCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 336 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 ||| || || || || || ||| |||| | | || || | |||||||||||||| Sbjct 335 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 276 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187 ||| |||||||| || || ||||| |||||||||||| ||||| ||| | || | Sbjct 275 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA-GGACGTGTTATTAATA 217 Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 | ||||||||| | | || | |||||||| || | ||||||||||| || || |||| Sbjct 216 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 157 Query 20248 CTCATAACTTCCCACTTGATTTAGCTTCGGCTGAG 20282 |||| |||||||| || || ||||| | | |||| Sbjct 156 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 122 >seq31551 Length=1713 Score = 233 bits (258), Expect = 6e-57 Identities = 323/446 (72%), Gaps = 11/446 (2%) Strand=Plus/Minus Query 19844 TGTTGCTGGCGTA-TTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTT 19902 ||||| || ||| ||||| || ||||| ||| ||||||||| || ||||| || | Sbjct 1161 TGTTG--GGTGTACTTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACCT 1104 Query 19903 CCTCGATCATCAAGGAAACAACTGAGGATGTATC-GCAGAACTATGGCTATAAGTTCGGG 19961 | | |||| |||||| || || ||| ||| || | || || || | ||||| Sbjct 1103 CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGTA-GGTTACAGATTCGGT 1045 Query 19962 CAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTT 20021 ||||| ||||| || |||||||| || ||||| || || || ||||| ||||||| || Sbjct 1044 CAAGAAGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTC 985 Query 20022 CAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTG 20081 ||||||||| | |||| ||||||||||| ||||||||||| || ||| ||| || || Sbjct 984 CAATATGCTAGTGTCAACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGCCTGTA 925 Query 20082 GTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTT 20141 || || || ||| | || | | || || |||| |||||||| || | || ||||| Sbjct 924 GTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACGGTTTC 865 Query 20142 AACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAG-----ATAATCCCAACATGGGCT 20195 || || ||||| || ||||||||| ||||| | |||| |||| || |||||| Sbjct 864 AATTTCAACCAATCTGTAGTTGATAGTCAAGGAAAAGGTCATGTAATTAATACCTGGGCT 805 Query 20196 GATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAAC 20255 ||| | | || | |||||||| || | ||||||||||| || || |||||||||||| Sbjct 804 GATCTCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 745 Query 20256 TTCCCACTTGATTTAGCTTCGGCTGA 20281 ||||| || || ||||| | | ||| Sbjct 744 TTCCCCCTAGACCTAGCTGCTGTTGA 719 >seq31730 Length=297 Score = 187 bits (206), Expect = 7e-43 Identities = 199/260 (77%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 19630 AGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCAC 19689 |||||||||| || | | | || ||| | || ||||| || |||||| |||| | Sbjct 11 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 70 Query 19690 CACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGT 19748 | | |||| ||| |||||| ||||| | | |||||| |||| ||||| |||||| | Sbjct 71 CTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCT 129 Query 19749 GATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAA 19808 |||||||||||||| || || ||||||||||| ||||| ||| | |||||||| || || Sbjct 130 GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAG 189 Query 19809 CACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCT 19868 ||||| ||||||||||| || || |||||| | || || ||||| |||||||| || || Sbjct 190 CACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCC 249 Query 19869 CTTTTCTCTGCTATGCACGG 19888 || ||| ||||||||| || Sbjct 250 CTATTCAGTGCTATGCATGG 269 >seq34854 Length=328 Score = 167 bits (184), Expect = 7e-37 Identities = 212/289 (73%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || ||||| ||||| ||||| | || |||||||| || | Sbjct 32 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 91 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| | ||||| || || || || Sbjct 92 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCT 151 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || || | || ||||||||| Sbjct 152 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 211 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||| || || || | |||| | || || ||||| |||| ||||| || || Sbjct 212 ATTATCTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATA 271 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATAT 19577 ||||||| ||||| || | ||||| |||||||||||||||||||| ||| Sbjct 272 TGGGAAG-CGGCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTAT 319 >seq31523 Length=225 Score = 165 bits (182), Expect = 2e-36 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 19956 TTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTG 20015 ||||| ||||| ||||| || |||||||| || ||||| || || || ||||| ||||| Sbjct 34 TTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTG 93 Query 20016 ATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTC 20075 || || ||||||||| |||||| ||||||||||||||||| ||||| || ||| ||| Sbjct 94 ATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGG 153 Query 20076 CCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAAT 20135 || || || || || ||| | || | | || ||| ||||||||||||||||||| ||| Sbjct 154 CCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAAT 213 Query 20136 GGTTTTAACTT 20146 ||||| || || Sbjct 214 GGTTTCAATTT 224 >seq77 Length=8408033 Score = 134 bits (148), Expect = 4e-27 Identities = 255/371 (69%), Gaps = 6/371 (2%) Strand=Plus/Plus Query 19395 TTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTA 19454 || || || || || || ||||||| ||||| || || | || ||||| | || || Sbjct 2698695 TTCATGGCTGCTCCTCCAATAGATATTGATGGTATTCGCAAACCTATTTCCAGATCTCTA 2698754 Query 19455 ATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTG 19514 | || |||||||||||||| || || || | |||||| || || ||||| || Sbjct 2698755 CTTTATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCAGCTATAGGTTTG 2698814 Query 19515 CACTTTTATCCGATCTGGGAAGC--CGGCACTTTAGATGAGTGGTTATACAACGGCGGTC 19572 || |||| || || | |||||| | || || ||||| ||||||||||||||||||| Sbjct 2698815 CATATTTACCCAATGTAGGAAGCATCATCAGTT--GATGAATGGTTATACAACGGCGGTC 2698872 Query 19573 CATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGT 19632 | ||| | || |||| | ||||||||| | || ||||| ||| ||| | ||| Sbjct 2698873 CTTATGAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGT 2698932 Query 19633 GGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCAC 19692 ||||||| || | |||| ||| | | ||||| || |||||| |||| || Sbjct 2698933 GGGAACTTAGTTTTCGTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTG 2698992 Query 19693 TATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGAT 19751 | || ||| || ||| ||||| | | |||||| |||| || |||||| |||| Sbjct 2698993 TTGCAATTGCTATTATTGT-TTTCTTGATCTACCCAATTGGTCACATAAGTTTTTATGAT 2699051 Query 19752 GGTATGCCTCT 19762 |||||||||| Sbjct 2699052 TGTATGCCTCT 2699062 >seq85 Length=5226098 Score = 127 bits (140), Expect = 6e-25 Identities = 131/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 20106 GGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT 20165 || ||| ||||||||||||||||||| |||||||| || || ||||| || ||||||||| Sbjct 1123353 GGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGAT 1123294 Query 20166 -GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATT 20224 ||||| || |||| ||||||| |||| | | ||| | |||||||| || | Sbjct 1123293 AGTCAA-GGTCGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTAT 1123235 Query 20225 TGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCT 20273 ||||||||||| || | ||||||||||||||||| || || ||||| Sbjct 1123234 GGAAGTTATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGCT 1123186 >seq203 Length=8626763 Score = 122 bits (134), Expect = 3e-23 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 19630 AGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCAC 19689 ||| |||||| || | | |||| ||| | || ||||| | || |||||| |||| | Sbjct 3756505 AGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGTTGCATATTCAGCTC 3756446 Query 19690 CACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGT 19748 | | || | ||| |||||| ||||| | | |||||| |||| ||||| || ||| | Sbjct 3756445 CGGTTGCAACTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGATTTTAT 3756387 Query 19749 GATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAA 19808 |||| ||||||||| || || || || |||| || || ||| | ||||||||||| || Sbjct 3756386 GATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTGTATTCCAAGCTGAG 3756327 Query 19809 CACAATATCCTTATGCATCCGTTCCA 19834 ||||| ||||||||| |||| || || Sbjct 3756326 CACAACATCCTTATGTATCCATTGCA 3756301 >seq134 Length=15115857 Score = 107 bits (118), Expect = 6e-19 Identities = 189/269 (70%), Gaps = 5/269 (2%) Strand=Plus/Minus Query 19335 TGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCC 19394 |||||||| || | ||||| ||| |||| | || | || || ||||| | ||| Sbjct 3765998 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT-CAGCTTCTATATTTATTATTGCC 3765940 Query 19395 TTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTA 19454 || || | || || || || ||||| ||||| || || |||| |||| || || || Sbjct 3765939 TTCATTGTTGCTCCTCCAGTTGATATTGATGGTATCTGTAAGCCTATTTCTGGATCTCTA 3765880 Query 19455 ATGTACGGAAACAATATTATTTCTGGAG-CAGTAGTTCCAAGCTCCAATG-CAATAGGAC 19512 | || || ||||||||||||| || | || || |||| | |||| | | ||||| Sbjct 3765879 CTTTATGGTAACAATATTATTTATGATGGCATTA-TTCCTA-CTCCTACAACTATAGGTT 3765822 Query 19513 TGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTC 19572 |||| ||||| | || |||||||| | || | ||||| ||||||||||||| | ||| Sbjct 3765821 TGCATTTTTACTCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAACGACAGTC 3765762 Query 19573 CATATCAACTTGTTGTCTTCCACTTCTTA 19601 | ||| | || |||| | ||||||||| Sbjct 3765761 CTTATGAGCTAATTGTTCTACACTTCTTA 3765733 >seq151 Length=2833985 Score = 96.9 bits (106), Expect = 1e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 19968 GAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATAT 20027 ||||| || |||||||| || ||||| || || || ||||| ||||||| || | |||| Sbjct 2328018 GAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCTATAT 2328077 Query 20028 GCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTT 20073 ||| |||||| ||||||||||| ||||| ||||| || ||| ||| Sbjct 2328078 GCTAGTTTCAACAATTCTCGTTCGTTACACTTCTTCCTAGCTGCTT 2328123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144379206284256