Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq444 482 4e-131 seq31551 205 1e-47 seq31730 196 8e-45 seq85 143 4e-29 seq34854 141 1e-28 seq31523 141 1e-28 seq203 134 2e-26 seq77 114 2e-20 seq134 91.5 2e-13 >seq444 Length=4271 Score = 482 bits (534), Expect = 4e-131 Identities = 677/945 (72%), Gaps = 4/945 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| | ||||| Sbjct 1074 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTTTTTATT 1016 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | |||||||| || || ||||| || ||||| || || || |||||||| || |||| Sbjct 1015 ATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 956 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || ||||| || || || ||||| || |||| |||| || || Sbjct 955 TCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATT 896 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 || || || || || || ||||||||||| ||| | ||||||| ||||| ||||| || Sbjct 895 GGATTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGC 836 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| | | | | | ||||| | | || | | || ||||| | Sbjct 835 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 776 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | |||| | ||||||||||||||||| |||||| |||||||| Sbjct 775 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 716 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 ||||| |||| || ||||| ||| | | || ||| | |||||||| || || Sbjct 715 CCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCT 656 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 || ||||||||| |||| || || || || |||||||| ||| | |||||||| || || Sbjct 655 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 596 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || ||||| |||||||||||||| || ||| |||||| || ||| | ||||| || | Sbjct 595 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 536 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 | || ||||||||| ||||| | || || ||| | ||| | |||||||| | Sbjct 535 CTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 476 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 || || || | ||||||| ||||| ||||||||||| || || ||||| || Sbjct 475 AATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTA 416 Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328 ||||| || || || || || || | || ||||| ||||| |||||||| | Sbjct 415 GCTGCTCACGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGT 356 Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388 |||||| |||||| | || | ||||| || | || | ||||| || || | ||| Sbjct 355 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 296 Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448 || | || ||||| |||||||||||||| ||||| |||||||||||||| |||||| Sbjct 295 ATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAG- 237 Query 212449 TCAGGTAAG-GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGA 212507 ||| | | | ||| || |||||||| |||| || ||||| | || |||||||||||||| Sbjct 236 TCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 177 Query 212508 AGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||||| ||| | ||||| ||||||||||| || ||| |||| Sbjct 176 AGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 132 >seq31551 Length=1713 Score = 205 bits (226), Expect = 1e-47 Identities = 311/442 (70%), Gaps = 7/442 (2%) Strand=Plus/Minus Query 212117 TGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTG 212176 || ||| ||||| ||| ||||| || | ||||| ||||||||| ||||| | | Sbjct 1168 TGCCAGATGTTGGGTGTAC-TTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGG 1110 Query 212177 TTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGT 212236 | || ||| | ||| | |||||||| | || || || ||||||| | Sbjct 1109 TAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGTAGGTTACAGAT 1050 Query 212237 TCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTA 212296 |||| ||||||||||| || ||||| ||||| ||||| ||||| || || || || | | Sbjct 1049 TCGGTCAAGAAGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGA 990 Query 212297 TCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGC 212356 ||||||| ||||| ||||||| | ||||| |||||||| || | |||| Sbjct 989 TCTTCCAATATGCTAGTGTCAACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGC 930 Query 212357 CTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATG 212416 |||| | || | ||||| || || | ||||| |||| ||||| || || |||| | Sbjct 929 CTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACG 870 Query 212417 GATTCAACTTCAACCAATCAGTTGTTGAT------GCATCAGGTAAGGTTGTTCCTACTT 212470 | ||||| ||||||||||| || |||||| | | |||| | || || ||| | Sbjct 869 GTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGAAAAGGTCATGTAATTAATACCT 810 Query 212471 GGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCAC 212530 ||| |||| | ||||| | || ||||||||||||||||||||||| ||| | ||||| | Sbjct 809 GGGCTGATCTCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 750 Query 212531 ACAACTTCCCACTTGACTTAGC 212552 | |||||||| || ||| |||| Sbjct 749 ATAACTTCCCCCTAGACCTAGC 728 >seq31730 Length=297 Score = 196 bits (216), Expect = 8e-45 Identities = 206/270 (76%), Gaps = 1/270 (0%) Strand=Plus/Plus Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 ||||||||||| | |||| | |||||||| |||||||| |||||| |||||||| | Sbjct 11 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 70 Query 211970 CTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAG 212029 |||| |||| ||| ||||| ||| | | |||||| | ||||| || || || | Sbjct 71 CTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTG 130 Query 212030 ACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAAC 212089 | ||||||||| |||| || || || || |||||||||||| | |||||||| || || | Sbjct 131 ATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 190 Query 212090 ATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCAT 212149 | |||||||||||||||||||| || ||| ||| || || ||| | ||||| || | Sbjct 191 ACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCC 250 Query 212150 TATTCTCTGCTATGCACGGTTCTCTTGTTA 212179 ||||| ||||||||| ||||| |||| || Sbjct 251 TATTCAGTGCTATGCATGGTTC-CTTGGTA 279 >seq85 Length=5226098 Score = 143 bits (158), Expect = 4e-29 Identities = 132/167 (79%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 212386 GGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445 |||||| |||| ||||| |||||||||||||| ||||| ||||||||||| || |||||| Sbjct 1123353 GGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGAT 1123294 Query 212446 GCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATG 212505 |||| || || ||| |||| |||| || |||| | || |||||||||||| Sbjct 1123293 AGTCAAGGTCGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTATG 1123234 Query 212506 GAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||||||| ||| | ||||| || |||||||| || ||| |||| Sbjct 1123233 GAAGTTATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGC 1123187 >seq34854 Length=328 Score = 141 bits (156), Expect = 1e-28 Identities = 208/289 (72%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 ||||| ||||| |||| | || | || ||| | | || |||| |||||||||||| | Sbjct 32 TTCTGTAACTGGATAACCAGCACCGAA-AACCGTCTTTACATTGGATGGTTTGGTGTTTT 90 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | ||| | | | ||||| | ||||| | || ||||| || || | Sbjct 91 GATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTC 149 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || |||||||| || |||| || | | ||||| |||| Sbjct 150 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 209 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807 | || ||||| ||||| || |||| |||| || || ||||| || || || || | Sbjct 210 ATATTATCTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAA 269 Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTA 211856 | |||||||| ||| || ||||||| ||| | ||||| || |||||||| Sbjct 270 TATGGGAAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTA 318 >seq31523 Length=225 Score = 141 bits (156), Expect = 1e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTC 212286 ||||||| ||||| ||||| ||||| || ||||| ||||| ||||| ||||| || || Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84 Query 212287 GGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTC 212346 || || | |||||||| ||||| |||||||| | ||||||||||||||| Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144 Query 212347 GCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTC 212406 || | |||||||| | || | ||||| || || | |||||| |||| ||||| ||| Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204 Query 212407 AACCTAAATGGATTCAACTTC 212427 ||||||||||| ||||| ||| Sbjct 205 AACCTAAATGGTTTCAATTTC 225 >seq203 Length=8626763 Score = 134 bits (148), Expect = 2e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 211897 TACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTT 211956 |||||||| ||| ||||||| | |||| |||||||||| |||||||| |||| Sbjct 3756518 TACATGGGTTATGAGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGTT 3756459 Query 211957 GCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAG 212016 || |||||||| || || || | ||| ||||| ||| | | |||||| | ||||| Sbjct 3756458 GCATATTCAGCTCCGGTTGCAACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAA 3756399 Query 212017 GGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTA 212076 || ||| | || | ||||||| |||| || || | | ||||| |||||| | ||| Sbjct 3756398 GGAAGATTTTATGATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTGTA 3756339 Query 212077 TTCCAAGCAGAACATAACATCCTTATGCACCCATTCCAT 212115 |||||||| || || |||||||||||| | ||||| ||| Sbjct 3756338 TTCCAAGCTGAGCACAACATCCTTATGTATCCATTGCAT 3756300 >seq77 Length=8408033 Score = 114 bits (126), Expect = 2e-20 Identities = 230/341 (67%), Gaps = 0/341 (0%) Strand=Plus/Plus Query 211675 TTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTC 211734 ||||| || || ||||| | ||||| || || || || |||| | | | || | Sbjct 2698695 TTCATGGCTGCTCCTCCAATAGATATTGATGGTATTCGCAAACCTATTTCCAGATCTCTA 2698754 Query 211735 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTA 211794 | ||||| ||||| || ||||| ||||| || ||||| |||| || || ||||| Sbjct 2698755 CTTTATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCAGCTATAGGTTTG 2698814 Query 211795 CACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCT 211854 || | || || || | ||||||| || | ||||||| ||| | ||||| || |||||| Sbjct 2698815 CATATTTACCCAATGTAGGAAGCATCATCAGTTGATGAATGGTTATACAACGGCGGTCCT 2698874 Query 211855 TACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGG 211914 || || | | | | |||||| | | || | | |||||||| | ||||| Sbjct 2698875 TATGAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 2698934 Query 211915 GAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTA 211974 |||||| | ||| |||||||| | ||||||| |||||| |||||||| ||||| Sbjct 2698935 GAACTTAGTTTTCGTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 2698994 Query 211975 TCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCA 212015 || ||| | ||| ||| | | |||||| | ||||| Sbjct 2698995 GCAATTGCTATTATTGTTTTCTTGATCTACCCAATTGGTCA 2699035 >seq134 Length=15115857 Score = 91.5 bits (100), Expect = 2e-13 Identities = 166/242 (69%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 211615 TGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTAGCA 211674 |||||||||||| | |||||||| | ||| | | || | | ||||| | || Sbjct 3765998 TGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACTCAGCTTCTATATTTATTATTGCC 3765940 Query 211675 TTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTC 211734 ||||| | || ||||| |||||||| || || ||| || | || | |||| || | Sbjct 3765939 TTCATTGTTGCTCCTCCAGTTGATATTGATGGTATCTGTAAGCCTATTTCTGGATCTCTA 3765880 Query 211735 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTA 211794 | ||||||||||| || || | || || || |||| || | | | || ||||| Sbjct 3765879 CTTTATGGTAACAATATTATTTATGATGGCATTATTCCTACTCCTACAACTATAGGTTTG 3765820 Query 211795 CACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCT 211854 || || || | || |||||||||||| || ||||||| ||| | ||||| | ||||| Sbjct 3765819 CATTTTTACTCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAACGACAGTCCT 3765760 Query 211855 TA 211856 || Sbjct 3765759 TA 3765758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807188004650560