Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq444 482 4e-131
seq31551 205 1e-47
seq31730 196 8e-45
seq85 143 4e-29
seq34854 141 1e-28
seq31523 141 1e-28
seq203 134 2e-26
seq77 114 2e-20
seq134 91.5 2e-13
>seq444
Length=4271
Score = 482 bits (534), Expect = 4e-131
Identities = 677/945 (72%), Gaps = 4/945 (0%)
Strand=Plus/Minus
Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668
|||| |||||||||||| | |||||||| | ||| | | | ||||| | |||||
Sbjct 1074 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTTTTTATT 1016
Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728
| |||||||| || || ||||| || ||||| || || || |||||||| || ||||
Sbjct 1015 ATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 956
Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788
|| | | || || ||||| || || || ||||| || |||| |||| || ||
Sbjct 955 TCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATT 896
Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848
|| || || || || || ||||||||||| ||| | ||||||| ||||| ||||| ||
Sbjct 895 GGATTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGC 836
Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908
|||||||| | | | | | ||||| | | || | | || ||||| |
Sbjct 835 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 776
Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968
||||||||||| | |||| | ||||||||||||||||| |||||| ||||||||
Sbjct 775 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 716
Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028
||||| |||| || ||||| ||| | | || ||| | |||||||| || ||
Sbjct 715 CCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCT 656
Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088
|| ||||||||| |||| || || || || |||||||| ||| | |||||||| || ||
Sbjct 655 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 596
Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148
|| ||||| |||||||||||||| || ||| |||||| || ||| | ||||| || |
Sbjct 595 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 536
Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208
| || ||||||||| ||||| | || || ||| | ||| | |||||||| |
Sbjct 535 CTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 476
Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268
|| || || | ||||||| ||||| ||||||||||| || || ||||| ||
Sbjct 475 AATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTA 416
Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328
||||| || || || || || || | || ||||| ||||| |||||||| |
Sbjct 415 GCTGCTCACGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGT 356
Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388
|||||| |||||| | || | ||||| || | || | ||||| || || | |||
Sbjct 355 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 296
Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448
|| | || ||||| |||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 295 ATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAG- 237
Query 212449 TCAGGTAAG-GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGA 212507
||| | | | ||| || |||||||| |||| || ||||| | || ||||||||||||||
Sbjct 236 TCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 177
Query 212508 AGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552
||||||||| ||| | ||||| ||||||||||| || ||| ||||
Sbjct 176 AGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 132
>seq31551
Length=1713
Score = 205 bits (226), Expect = 1e-47
Identities = 311/442 (70%), Gaps = 7/442 (2%)
Strand=Plus/Minus
Query 212117 TGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTG 212176
|| ||| ||||| ||| ||||| || | ||||| ||||||||| ||||| | |
Sbjct 1168 TGCCAGATGTTGGGTGTAC-TTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGG 1110
Query 212177 TTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGT 212236
| || ||| | ||| | |||||||| | || || || ||||||| |
Sbjct 1109 TAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGTAGGTTACAGAT 1050
Query 212237 TCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTA 212296
|||| ||||||||||| || ||||| ||||| ||||| ||||| || || || || | |
Sbjct 1049 TCGGTCAAGAAGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGA 990
Query 212297 TCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGC 212356
||||||| ||||| ||||||| | ||||| |||||||| || | ||||
Sbjct 989 TCTTCCAATATGCTAGTGTCAACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGC 930
Query 212357 CTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATG 212416
|||| | || | ||||| || || | ||||| |||| ||||| || || |||| |
Sbjct 929 CTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACG 870
Query 212417 GATTCAACTTCAACCAATCAGTTGTTGAT------GCATCAGGTAAGGTTGTTCCTACTT 212470
| ||||| ||||||||||| || |||||| | | |||| | || || ||| |
Sbjct 869 GTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGAAAAGGTCATGTAATTAATACCT 810
Query 212471 GGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCAC 212530
||| |||| | ||||| | || ||||||||||||||||||||||| ||| | ||||| |
Sbjct 809 GGGCTGATCTCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 750
Query 212531 ACAACTTCCCACTTGACTTAGC 212552
| |||||||| || ||| ||||
Sbjct 749 ATAACTTCCCCCTAGACCTAGC 728
>seq31730
Length=297
Score = 196 bits (216), Expect = 8e-45
Identities = 206/270 (76%), Gaps = 1/270 (0%)
Strand=Plus/Plus
Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969
||||||||||| | |||| | |||||||| |||||||| |||||| |||||||| |
Sbjct 11 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 70
Query 211970 CTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAG 212029
|||| |||| ||| ||||| ||| | | |||||| | ||||| || || || |
Sbjct 71 CTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTG 130
Query 212030 ACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAAC 212089
| ||||||||| |||| || || || || |||||||||||| | |||||||| || || |
Sbjct 131 ATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 190
Query 212090 ATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCAT 212149
| |||||||||||||||||||| || ||| ||| || || ||| | ||||| || |
Sbjct 191 ACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCC 250
Query 212150 TATTCTCTGCTATGCACGGTTCTCTTGTTA 212179
||||| ||||||||| ||||| |||| ||
Sbjct 251 TATTCAGTGCTATGCATGGTTC-CTTGGTA 279
>seq85
Length=5226098
Score = 143 bits (158), Expect = 4e-29
Identities = 132/167 (79%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 212386 GGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445
|||||| |||| ||||| |||||||||||||| ||||| ||||||||||| || ||||||
Sbjct 1123353 GGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGAT 1123294
Query 212446 GCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATG 212505
|||| || || ||| |||| |||| || |||| | || ||||||||||||
Sbjct 1123293 AGTCAAGGTCGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTATG 1123234
Query 212506 GAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552
||||||||||| ||| | ||||| || |||||||| || ||| ||||
Sbjct 1123233 GAAGTTATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGC 1123187
>seq34854
Length=328
Score = 141 bits (156), Expect = 1e-28
Identities = 208/289 (72%), Gaps = 4/289 (1%)
Strand=Plus/Plus
Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628
||||| ||||| |||| | || | || ||| | | || |||| |||||||||||| |
Sbjct 32 TTCTGTAACTGGATAACCAGCACCGAA-AACCGTCTTTACATTGGATGGTTTGGTGTTTT 90
Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687
|||||||| | ||| | | | ||||| | ||||| | || ||||| || || |
Sbjct 91 GATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTC 149
Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747
|||| || ||||| || || || |||||||| || |||| || | | ||||| ||||
Sbjct 150 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 209
Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807
| || ||||| ||||| || |||| |||| || || ||||| || || || || |
Sbjct 210 ATATTATCTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAA 269
Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTA 211856
| |||||||| ||| || ||||||| ||| | ||||| || ||||||||
Sbjct 270 TATGGGAAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTA 318
>seq31523
Length=225
Score = 141 bits (156), Expect = 1e-28
Identities = 152/201 (76%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTC 212286
||||||| ||||| ||||| ||||| || ||||| ||||| ||||| ||||| || ||
Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84
Query 212287 GGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTC 212346
|| || | |||||||| ||||| |||||||| | |||||||||||||||
Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144
Query 212347 GCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTC 212406
|| | |||||||| | || | ||||| || || | |||||| |||| ||||| |||
Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204
Query 212407 AACCTAAATGGATTCAACTTC 212427
||||||||||| ||||| |||
Sbjct 205 AACCTAAATGGTTTCAATTTC 225
>seq203
Length=8626763
Score = 134 bits (148), Expect = 2e-26
Identities = 161/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 211897 TACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTT 211956
|||||||| ||| ||||||| | |||| |||||||||| |||||||| ||||
Sbjct 3756518 TACATGGGTTATGAGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGTT 3756459
Query 211957 GCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAG 212016
|| |||||||| || || || | ||| ||||| ||| | | |||||| | |||||
Sbjct 3756458 GCATATTCAGCTCCGGTTGCAACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAA 3756399
Query 212017 GGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTA 212076
|| ||| | || | ||||||| |||| || || | | ||||| |||||| | |||
Sbjct 3756398 GGAAGATTTTATGATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTGTA 3756339
Query 212077 TTCCAAGCAGAACATAACATCCTTATGCACCCATTCCAT 212115
|||||||| || || |||||||||||| | ||||| |||
Sbjct 3756338 TTCCAAGCTGAGCACAACATCCTTATGTATCCATTGCAT 3756300
>seq77
Length=8408033
Score = 114 bits (126), Expect = 2e-20
Identities = 230/341 (67%), Gaps = 0/341 (0%)
Strand=Plus/Plus
Query 211675 TTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTC 211734
||||| || || ||||| | ||||| || || || || |||| | | | || |
Sbjct 2698695 TTCATGGCTGCTCCTCCAATAGATATTGATGGTATTCGCAAACCTATTTCCAGATCTCTA 2698754
Query 211735 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTA 211794
| ||||| ||||| || ||||| ||||| || ||||| |||| || || |||||
Sbjct 2698755 CTTTATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCAGCTATAGGTTTG 2698814
Query 211795 CACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCT 211854
|| | || || || | ||||||| || | ||||||| ||| | ||||| || ||||||
Sbjct 2698815 CATATTTACCCAATGTAGGAAGCATCATCAGTTGATGAATGGTTATACAACGGCGGTCCT 2698874
Query 211855 TACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGG 211914
|| || | | | | |||||| | | || | | |||||||| | |||||
Sbjct 2698875 TATGAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 2698934
Query 211915 GAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTA 211974
|||||| | ||| |||||||| | ||||||| |||||| |||||||| |||||
Sbjct 2698935 GAACTTAGTTTTCGTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 2698994
Query 211975 TCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCA 212015
|| ||| | ||| ||| | | |||||| | |||||
Sbjct 2698995 GCAATTGCTATTATTGTTTTCTTGATCTACCCAATTGGTCA 2699035
>seq134
Length=15115857
Score = 91.5 bits (100), Expect = 2e-13
Identities = 166/242 (69%), Gaps = 1/242 (0%)
Strand=Plus/Minus
Query 211615 TGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTAGCA 211674
|||||||||||| | |||||||| | ||| | | || | | ||||| | ||
Sbjct 3765998 TGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACTCAGCTTCTATATTTATTATTGCC 3765940
Query 211675 TTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTC 211734
||||| | || ||||| |||||||| || || ||| || | || | |||| || |
Sbjct 3765939 TTCATTGTTGCTCCTCCAGTTGATATTGATGGTATCTGTAAGCCTATTTCTGGATCTCTA 3765880
Query 211735 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTA 211794
| ||||||||||| || || | || || || |||| || | | | || |||||
Sbjct 3765879 CTTTATGGTAACAATATTATTTATGATGGCATTATTCCTACTCCTACAACTATAGGTTTG 3765820
Query 211795 CACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCT 211854
|| || || | || |||||||||||| || ||||||| ||| | ||||| | |||||
Sbjct 3765819 CATTTTTACTCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAACGACAGTCCT 3765760
Query 211855 TA 211856
||
Sbjct 3765759 TA 3765758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 807188004650560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |