Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq45 93.3 1e-13 >seq45 Length=3313612 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 371100 GCACCATGACTAATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGT 371159 || |||||| ||| ||| |||| | |||||||| |||| ||||||||||||||| || Sbjct 1755517 GCTCCATGAGCAATCATGCAATCTCTTTCCATCTCTCCAAATCGGAGACCACCATCTCGA 1755458 Query 371160 GACCGTCCTTCTGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGGTTGCGTGCATGT 371219 |||||||| || | ||| | |||||| | || | ||| || || | ||| Sbjct 1755457 GACCGTCCCTCAGCAGGCTGCCTTGTAAGAATTTGCACAGGACCCCGACCACGGGAATGG 1755398 Query 371220 GACTTGTCAACTACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAATCATA 371279 ||| ||| | ||||||||||| || | ||||||||| ||| | | ||||||||| Sbjct 1755397 ATCTTATCATCCACCATGTGCTTAAGTCTCTGATAATATGTTGGACCCAGGAAAATCATA 1755338 Query 371280 G 371280 | Sbjct 1755337 G 1755337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302746149246032