Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq652 104 2e-17
seq203 100 2e-16
seq49 100 2e-16
seq569 95.1 1e-14
seq116 87.8 2e-12
seq22 87.8 2e-12
seq87 86.0 5e-12
>seq652
Length=2384379
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | ||||| || || ||||||| || |||| ||| | ||||| ||| |
Sbjct 465057 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACCTTGGAAGTTGAGAGCTC 465116
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
|||||||| || | |||||| || ||| ||||| |||||||| || || |||||
Sbjct 465117 TGACACCATTGACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCAGATCA 465176
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTATA 24168
|| || || || | | ||| || ||||| || |||| || | | | ||| ||||||
Sbjct 465177 GCAAAGGCTTATCTTTGCCGGGAAACAACTTGAGGATGGTAGGA-CTTTGGCGGATTATA 465235
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
|||| || || || || || |||| || ||| | ||||||| || ||
Sbjct 465236 ACATCCAGAAGGAGTCCACTCTTCACTTGGTGCTGCGATTGAGGGGGGG 465284
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| || || | ||||| || | || ||| |||| |||||
Sbjct 464830 ATGCAAATCTTTGTGAAGACCCTCACTGGCAAGACCATAACCCTCGAGGTCGAAAGTTCG 464889
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| ||||| | || || || || ||||| || || || || || || ||
Sbjct 464890 GACACTATCGATAACGTGAAGGCGAAAATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 464949
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| |||||| | |||||||||||||| |||| ||| | || || || |||
Sbjct 464950 CAGAGGTTGATTTTTGCTGGCAAGCAACTCGAGGATGGCAGGACGCTCGCAGACTACAAC 465009
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218
|||||||| ||||| || |||| || ||| | | |||| ||||||
Sbjct 465010 ATTCAAAAGGAATCCACCCTTCACTTGGTGCTCCGTCTGAGGGGAGGA 465057
Score = 82.4 bits (90), Expect = 7e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
|||||| | ||||| || || | || ||||| | || || | || || |||
Sbjct 465513 AATGCAGATTTTTGTCAAGACTCTGACCGGAAAGACCATCACTCTGGAGGTGGAGAGTTC 465572
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||||||||||| | || || |||||| ||||| || ||||| ||||| || ||
Sbjct 465573 AGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCA 465632
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
||||| ||||||| | ||| |||||||| ||||| | || | | |||||||||
Sbjct 465633 GCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGACGGAAGGACACTGGCCGATTATAA 465692
Query 24170 CATTCAAAAAGAATCTAC 24187
||| || ||||| || ||
Sbjct 465693 CATCCAGAAAGAGTCAAC 465710
>seq203
Length=8626763
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| ||||| | || || || | || ||| | || || || | |
Sbjct 5729930 ATGCAAATCTTTGTGAAAACCCTTACGGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 5729989
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| ||||| | || ||| ||| ||| ||||| ||||| || ||||| || ||
Sbjct 5729990 GACACAATCGATAATGTAAAAGCAAAAATTCAAGACAAGGAAGGGATCCCTCCGGACCAG 5730049
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| || || | | |||||||| || ||||||| | ||| | | ||||||||||
Sbjct 5730050 CAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGAACCTTGGCCGATTATAAC 5730109
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
||||| || || ||||| | || || |||
Sbjct 5730110 ATTCAGAAGGAGTCTACCCTCCACTTGGTG 5730139
Score = 82.4 bits (90), Expect = 7e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
|||||| | ||||| || || | || |||||| | || ||| | || |||||| |
Sbjct 5730841 AATGCAGATTTTTGTCAAGACCCTGACGGGAAAAACCATCACCTTGGAGGTCGAGAGCTC 5730900
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||||| || || | || || |||||| ||||| || || || || || || ||
Sbjct 5730901 GGACACGATTGATAATGTTAAGGCAAAGATCCAAGACAAGGAGGGGATCCCACCGGACCA 5730960
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
|||||||||||| | || ||| ||||| || || |||| || | | | || || ||
Sbjct 5730961 ACAGAGACTGATCTTCGCCGGTAAGCAGCTGGAGGATGGGAGGACCCTTGCTGACTACAA 5731020
Query 24170 CATTCAAAAAGAATCTAC 24187
|||||| || || |||||
Sbjct 5731021 CATTCAGAAGGAGTCTAC 5731038
>seq49
Length=4798478
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | ||||| || || | ||||| ||| | || || | ||||| ||| |
Sbjct 2840857 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2840916
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||||||||||| | |||||| || ||| ||||| |||||||| || || |||||
Sbjct 2840917 TGACACCATCGACAACGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGATCA 2840976
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168
||||| || |||| | ||| || || || ||||||| || || | || ||||| |
Sbjct 2840977 GCAGAGGCTTATTTTTGCCGGGAAACAGCTAGAAGATGGTAG-GACTTTGGCGGATTACA 2841035
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
|||| || ||||| || || |||| || || | | |||| |||||
Sbjct 2841036 ACATCCAGAAAGAGTCCACTCTTCACTTGGTTCTGCGCCTGAGGGGAGG 2841084
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | ||||| || || | ||||| ||| | || || | ||||| ||| |
Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||||| ||||| | |||||| ||| ||| |||||||||||||| || || |||||
Sbjct 2869973 TGACACTATCGACAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATTCCCCCGGATCA 2870032
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
||||| || |||| | || || || || ||||||| || | | ||||||||
Sbjct 2870033 GCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTATAA 2870092
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
||| || ||||| || || |||| || || | | |||| |||||
Sbjct 2870093 CATCCAGAAAGAGTCGACTCTTCACTTGGTTCTGCGTCTGAGGGGAGG 2870140
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | ||||| || || | ||||| ||| | || || | ||||| ||| |
Sbjct 2846845 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2846904
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||||||||||| | |||||| ||| ||| ||||| |||||||| || || |||||
Sbjct 2846905 TGACACCATCGACAACGTCAAAGCAAAAATTCAGGACAAGGAAGGCATTCCCCCGGATCA 2846964
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168
||||| || |||| | || || || || ||||||| || || | || ||||| |
Sbjct 2846965 GCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAG-GACTTTGGCGGATTACA 2847023
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199
|||| || || || || || |||| || ||
Sbjct 2847024 ACATCCAGAAGGAGTCCACTCTTCACTTGGT 2847054
>seq569
Length=4400913
Score = 95.1 bits (104), Expect = 1e-14
Identities = 141/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | || || ||||| |||| || || | || ||| |||| || ||| ||
Sbjct 2058181 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTGGAGTCC 2058122
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
|||||||||||| | ||||| ||||| ||||| || ||||| ||||||||
Sbjct 2058121 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGAC 2058062
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| ||| | || || | || ||||||||| ||||| || | | | | | || ||| ||
Sbjct 2058061 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTAC 2058002
Query 24168 AACATTCAAAAAGAATCTAC 24187
||||| || || || || ||
Sbjct 2058001 AACATCCAGAAGGAGTCGAC 2057982
Score = 86.0 bits (94), Expect = 5e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | || || ||||| |||| || || | || ||| | || || ||| ||
Sbjct 2054930 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTTGAGGTGGAGTCC 2054871
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
|||||||||||| | ||||| ||||| || ||||| ||||| ||||| ||
Sbjct 2054870 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCTCCGGAC 2054811
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| ||| | || || | || ||||||||| ||||| || | | | | | || ||| ||
Sbjct 2054810 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTAC 2054751
Query 24168 AACATTCAAAAAGAATCTAC 24187
||||| || || || || ||
Sbjct 2054750 AACATCCAGAAGGAGTCGAC 2054731
>seq116
Length=10441785
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
|||||||||||| | ||||| ||||| ||||| || ||||| |||||||||||
Sbjct 4712239 CGACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCA 4712180
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
||| | ||||| | || ||| ||||| ||||| || | ||| | | || |||||| ||
Sbjct 4712179 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGGACCCTCGCCGATTACAA 4712120
Query 24170 CATTCAAAAAGAATCTAC 24187
||| || || || || ||
Sbjct 4712119 CATCCAGAAGGAGTCCAC 4712102
Score = 87.8 bits (96), Expect = 2e-12
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | || || || || | || || || | || || |||| |||||| |
Sbjct 4712529 AAGATGCAGATCTTCGTCAAGACCCTGACCGGGAAGACCATCACGCTCGAGGTCGAGAGC 4712470
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
|||||||||||| | ||||| ||||| ||||| || ||||| |||||||||
Sbjct 4712469 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGAT 4712410
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| ||| | || || | || ||||||||| ||||| || | | | | | || ||| ||
Sbjct 4712409 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCGCCGACTAC 4712350
Query 24168 AACATTCAAAAAGAATCTACAATTCA 24193
||||| || || || || || ||||
Sbjct 4712349 AACATCCAGAAGGAGTCCACGCTTCA 4712324
>seq22
Length=3960921
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || | || || || | || ||| | || |||||| | |
Sbjct 262653 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGAGCTCC 262594
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | ||||| ||||| ||||| |||||||| || || || ||
Sbjct 262593 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAG 262534
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| ||||| | || ||||||||| ||||| || | | | | | | ||||| |||
Sbjct 262533 CAGAGGCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCGGATTACAAC 262474
Query 24171 ATTCAAAAAGAATCTACAATTCA 24193
|| || || || || || ||||
Sbjct 262473 ATCCAGAAGGAGTCGACCCTTCA 262451
>seq87
Length=12262769
Score = 86.0 bits (94), Expect = 5e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | || || ||||| |||| || || | || ||| |||| |||||| |
Sbjct 7257433 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTCGAGGTCGAGTCG 7257374
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
| |||||||||||| | || || ||||| ||||| || ||||| || || ||
Sbjct 7257373 AGCGACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGAC 7257314
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| ||| | || || | || ||||||||| ||||| || | | | | | || ||| ||
Sbjct 7257313 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGGACCCTCGCCGACTAC 7257254
Query 24168 AACATTCAAAAAGAATCTAC 24187
||||| || || || || ||
Sbjct 7257253 AACATCCAGAAGGAGTCCAC 7257234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429745395398280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |