Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq49 122 7e-23
seq203 114 1e-20
seq652 113 4e-20
>seq49
Length=4798478
Score = 122 bits (134), Expect = 7e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||| |||||||| || || || || ||||| || || | ||| ||| |
Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972
Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
|||||| | | |||| || ||| ||||||| || ||||||||| | ||| ||||
Sbjct 2869973 TGACACTATCG-ACAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATTCCCCCGGATC 2870031
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
|||| || ||||||| ||| || ||||| ||||||||| | || |||| |||||||
Sbjct 2870032 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTATA 2870091
Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
|||| || |||||||| ||| | || |||| || | || | |||||
Sbjct 2870092 ACATCCAGAAAGAGTCGACTCTTCACTTGGTTCTGCGTCTGAGGGGAGG 2870140
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||||||||| || || || || || ||||| || || | ||| ||| |
Sbjct 2840857 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2840916
Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
||||| | ||||| || ||| |||||| || || |||||| | ||| ||||
Sbjct 2840917 TGACAC-CATCGACAACGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGATC 2840975
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
|||| || ||||||| ||| || ||||| ||||||||| | || |||| ||||| |
Sbjct 2840976 AGCAGAGGCTTATTTTTGCCGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACA 2841035
Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
|||| || |||||||| ||| | || |||| || | || | |||||
Sbjct 2841036 ACATCCAGAAAGAGTCCACTCTTCACTTGGTTCTGCGCCTGAGGGGAGG 2841084
Score = 104 bits (114), Expect = 2e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||||||||| || || || || || ||||| || || | ||| ||| |
Sbjct 2846845 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2846904
Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
||||| | ||||| || ||| ||||||| || || |||||| | ||| ||||
Sbjct 2846905 TGACAC-CATCGACAACGTCAAAGCAAAAATTCAGGACAAGGAAGGCATTCCCCCGGATC 2846963
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
|||| || ||||||| ||| || ||||| ||||||||| | || |||| ||||| |
Sbjct 2846964 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACA 2847023
Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGT 115494
|||| || || ||||| ||| | || ||||
Sbjct 2847024 ACATCCAGAAGGAGTCCACTCTTCACTTGGT 2847054
>seq203
Length=8626763
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 115278 GATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGG 115337
|||| | |||||||| ||||| ||||| || ||||| || || || ||| | || ||
Sbjct 5729922 GATTTCAGATGCAAATCTTTGTGAAAACCCTTACGGGCAAGACAATCACCCTTGAGGTGG 5729981
Query 115338 AGTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCG 115397
| | |||||| | | | |||||| ||||||| || || ||||| ||||
Sbjct 5729982 AAAGCTCCGACACAATCGATAATGTAAAAGCAAAAATTCAAGACAAGGAAGGGATCCCTC 5730041
Query 115398 TTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCG 115457
|| ||||| || ||||| | ||| ||||| || | ||||||| | |||| ||||||
Sbjct 5730042 CGGACCAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGAACCTTGGCCG 5730101
Query 115458 ATTATAACATTCAAAAAGAGTCTACTATACATATGGTG 115495
||||||||||||| || |||||||| | || |||||
Sbjct 5730102 ATTATAACATTCAGAAGGAGTCTACCCTCCACTTGGTG 5730139
>seq652
Length=2384379
Score = 113 bits (124), Expect = 4e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||| |||||||| || || || || || || || ||| | ||| ||| |
Sbjct 465057 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACCTTGGAAGTTGAGAGCTC 465116
Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
||||| ||| |||| || ||| |||||| || || |||||| | ||| ||||
Sbjct 465117 TGACACCATTG-ACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCAGATC 465175
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
||||||| ||||| | ||| || |||||| | || |||| | || |||| |||||||
Sbjct 465176 AGCAAAGGCTTATCTTTGCCGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTATA 465235
Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
|||| || || ||||| ||| | || ||||| || ||||| | || ||
Sbjct 465236 ACATCCAGAAGGAGTCCACTCTTCACTTGGTGCTGCGATTGAGGGGGGG 465284
Score = 84.2 bits (92), Expect = 2e-11
Identities = 149/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG--TCC 115342
|||||| ||||||||||| || || || ||||| ||||| || | || |||| | |
Sbjct 465513 AATGCAGATTTTTGTCAAGACTCTGACCGGAAAGACCATCACTCTGGAGGTGGAGAGTTC 465572
Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401
|| |||| | | |||| || || ||| || || || || ||| |||| ||
Sbjct 465573 AG--ACACCATCG-ACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCAGA 465629
Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461
||||| || || |||| ||| || || ||| | ||||| | | || ||||||||||
Sbjct 465630 CCAGCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGACGGAAGGACACTGGCCGATTA 465689
Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGT 115494
|||||| || |||||||| ||| | || ||||
Sbjct 465690 TAACATCCAGAAAGAGTCAACTCTGCACTTGGT 465722
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425155431181120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |