Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq49 122 7e-23 seq203 114 1e-20 seq652 113 4e-20 >seq49 Length=4798478 Score = 122 bits (134), Expect = 7e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| |||||||| || || || || ||||| || || | ||| ||| | Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 |||||| | | |||| || ||| ||||||| || ||||||||| | ||| |||| Sbjct 2869973 TGACACTATCG-ACAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATTCCCCCGGATC 2870031 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || ||||||| ||| || ||||| ||||||||| | || |||| ||||||| Sbjct 2870032 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTATA 2870091 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||| || |||||||| ||| | || |||| || | || | ||||| Sbjct 2870092 ACATCCAGAAAGAGTCGACTCTTCACTTGGTTCTGCGTCTGAGGGGAGG 2870140 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| || || || || || ||||| || || | ||| ||| | Sbjct 2840857 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2840916 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| | ||||| || ||| |||||| || || |||||| | ||| |||| Sbjct 2840917 TGACAC-CATCGACAACGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGATC 2840975 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || ||||||| ||| || ||||| ||||||||| | || |||| ||||| | Sbjct 2840976 AGCAGAGGCTTATTTTTGCCGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACA 2841035 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||| || |||||||| ||| | || |||| || | || | ||||| Sbjct 2841036 ACATCCAGAAAGAGTCCACTCTTCACTTGGTTCTGCGCCTGAGGGGAGG 2841084 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| || || || || || ||||| || || | ||| ||| | Sbjct 2846845 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2846904 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| | ||||| || ||| ||||||| || || |||||| | ||| |||| Sbjct 2846905 TGACAC-CATCGACAACGTCAAAGCAAAAATTCAGGACAAGGAAGGCATTCCCCCGGATC 2846963 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || ||||||| ||| || ||||| ||||||||| | || |||| ||||| | Sbjct 2846964 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACA 2847023 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGT 115494 |||| || || ||||| ||| | || |||| Sbjct 2847024 ACATCCAGAAGGAGTCCACTCTTCACTTGGT 2847054 >seq203 Length=8626763 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 115278 GATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGG 115337 |||| | |||||||| ||||| ||||| || ||||| || || || ||| | || || Sbjct 5729922 GATTTCAGATGCAAATCTTTGTGAAAACCCTTACGGGCAAGACAATCACCCTTGAGGTGG 5729981 Query 115338 AGTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCG 115397 | | |||||| | | | |||||| ||||||| || || ||||| |||| Sbjct 5729982 AAAGCTCCGACACAATCGATAATGTAAAAGCAAAAATTCAAGACAAGGAAGGGATCCCTC 5730041 Query 115398 TTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCG 115457 || ||||| || ||||| | ||| ||||| || | ||||||| | |||| |||||| Sbjct 5730042 CGGACCAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGAACCTTGGCCG 5730101 Query 115458 ATTATAACATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||||||||||| || |||||||| | || ||||| Sbjct 5730102 ATTATAACATTCAGAAGGAGTCTACCCTCCACTTGGTG 5730139 >seq652 Length=2384379 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| |||||||| || || || || || || || ||| | ||| ||| | Sbjct 465057 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACCTTGGAAGTTGAGAGCTC 465116 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| ||| |||| || ||| |||||| || || |||||| | ||| |||| Sbjct 465117 TGACACCATTG-ACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCAGATC 465175 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||||| ||||| | ||| || |||||| | || |||| | || |||| ||||||| Sbjct 465176 AGCAAAGGCTTATCTTTGCCGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTATA 465235 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||| || || ||||| ||| | || ||||| || ||||| | || || Sbjct 465236 ACATCCAGAAGGAGTCCACTCTTCACTTGGTGCTGCGATTGAGGGGGGG 465284 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG--TCC 115342 |||||| ||||||||||| || || || ||||| ||||| || | || |||| | | Sbjct 465513 AATGCAGATTTTTGTCAAGACTCTGACCGGAAAGACCATCACTCTGGAGGTGGAGAGTTC 465572 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || |||| | | |||| || || ||| || || || || ||| |||| || Sbjct 465573 AG--ACACCATCG-ACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCAGA 465629 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||||| || || |||| ||| || || ||| | ||||| | | || |||||||||| Sbjct 465630 CCAGCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGACGGAAGGACACTGGCCGATTA 465689 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGT 115494 |||||| || |||||||| ||| | || |||| Sbjct 465690 TAACATCCAGAAAGAGTCAACTCTGCACTTGGT 465722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425155431181120